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Combined display of all available logs of Center for Cognitive Neuroscience. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

00:16, 17 December 2025 Patrick talk contribs created page New Project (Created page with "*When adding a new project to the system, it's important to fill out all fields in the New Project Form. *This includes IRB, Funding, Personnel, as well as project specific information regarding start and end dates, expected number of scans per week, total scan load, duration, and whether the project has any scheduling constraints. *All currently active projects should have this Form completed. If your project already exists and you need to add this information, simply...")
00:13, 17 December 2025 Patrick talk contribs created page Personnel (Created page with "Information about lab members can be found under General --> My Profile | My Personnel. 200px | thumb | center | Personnel Page ===Adding a New User=== Before CCN Techs can activate a user for scanning in the scheduling system, an account must be created for them by a member of their lab. Your lab study PI or co-coordinator should have administrative privileges to add new users to the lab. #Navigate to "General" → "My Profile | My...")
00:04, 17 December 2025 Patrick talk contribs created page Facilities (Created page with "===MRI Facilities=== The Staglin IMHRO Center for Cognitive Neuroscience operates a Siemens 3 Tesla Magnetom Prisma Fit MRI Scanner running XA30 software, equipped with 20, 32, and 64 channel head coils. *Sequences: Standout sequences include full CMRR multi band package, Siemens simultaneous multi slice with physio logging, 3D multi-delay pCASL, T1 and T2 structural with navigator technology, multi shell, multi band diffusion, MEGAPRESS and HERMES multi voxel spectro...")
23:57, 16 December 2025 Patrick talk contribs created page Peripheral Equipment (Created page with "===Peripheral Equipment=== Peripheral equipment available for projects include: *Siemens intercom system *Siemens physiological measurement system **Includes pulse, respiration, and EKG *[http://www.mrivideo.com/visuastimdigital.php VisuaStim digital system] by RTC **Includes goggles/headphone/controller unit *Opto Acoustic Noise Canceling Headphones **Thin profile headphones that fit in 32CH coil with active noise cancellation technology *BOLDscreen Display **...")
23:36, 16 December 2025 Patrick talk contribs created page Scan Procedures (Created page with "*'''Metal Screening:''' All participants need to be diligently screened for contraindications to MR imaging during recruitment. Review and sign the [https://drive.google.com/file/d/1aUwmgXoij_czd8YktXmo0yDLjpqbuUpm/view?usp=sharing Metal Screening Form] with each participant for each scan session. If there are any items of concern, follow up with your participant for more information, collect all relevant documentation from them and/or their medical team, and pass everyt...")
23:13, 16 December 2025 Patrick talk contribs created page Scheduling Rule (Created page with "*'''Booking:''' The center does not mandate a strict limit on when scans can be booked relative to the scanning date. However, to foster cooperation and consideration within the community, booked scan times are assumed to be filled (assigned a participant) promptly and booked on an as-needed basis. Scans that are booked in advance, above and beyond the current scheduling norms, will be reviewed by the CCN staff and potentially cancelled. Under current policy, the schedul...")
23:08, 16 December 2025 Patrick talk contribs created page Policies (Created page with "*'''User Rights:''' All users have equal rights and privileges to perform projects at the center. All users will be treated with respect; failure to do so may result in suspension of scanning privileges. Any user can ask questions and suggest policy changes/additions by reaching out to Executive Committee. *'''Scan Personnel:''' For the safety of both the participants and the investigators, all scans must have two MR-safety certified investigators in the facility for th...")
22:32, 16 December 2025 Patrick talk contribs created page Safety Certification (Created page with "*'''Safety Certification and Recertification:''' CCN safety certification is done using a combination of in-person sessions and remote work via the Staglin Safety and Training Course on [https://bruinlearn.ucla.edu/ Bruinlearn]. You can log into BruinLearn with your UCLA credentials, but will need an enrollment link to register for the Staglin Center Safety module for the first time. Please get an enrollment link from your lab manager or the ccn-resources channel on Slac...")
22:04, 16 December 2025 Patrick talk contribs created page CCN Space (Created page with "*'''Restricted Areas''': Zones are marked with signage. Only safety certified users and screened participants are allowed to enter the scanning suite (control room & scanner room) unless granted an exemption by CCN. This is for the safety of the individuals and liability of the center. If an exemption is granted, it is for a single instance. It is paramount that uncertified users do not touch any research equipment while shadowing. *'''Exceptions to Restricted Access'''...")
23:27, 4 November 2025 Patrick talk contribs created page FAQs (Created page with "==Certification== ===I've been safety certified with CCN before. How do I get recertified?=== *Safety-certified users need to renew their certification every year. See the Training section on this page for general instructions on recertification. To summarize, you will need to log onto BruinLearn (with your UCLA credentials), enroll in the Staglin safety course if you haven't already, take the MRI Recertification Exam, an...")
16:09, 20 May 2025 Patrick talk contribs created page MediaWiki:Common.css (Created page with "CSS placed here will be applied to all skins: #toc { position: fixed; right: 0; top: 7em; Adjust as needed; 5em might be header height, 6em just under: bottom: 5em;: Alternative bottom positioning: z-index: 10000; Ensures it floats above other content: background-color: rgb(249, 249, 249); Fallback background color: background-color: rgba(249, 249, 249, 0.9); Background with opacity: /* Higher opacity (last argument) me...")
22:20, 19 May 2025 Hwang talk contribs created page Hoffman2:Scripts:clean up.sh (Created page with "This script is used to clean up certain FSL processing files. 1. tsplot 2. feat folders (+.feat) 3. FSL stdout and stderr files (such as *.e28678.8, *.o4436) 4. files end with .con .grp .Icon .mat Load the module first module load ccnscripts For clean up feat folders, clean_up.sh -f PATH/TO/FOLDER For .o and .e files clean_up.sh -o PATH/TO/FOLDER For tsplot clean_up.sh -t PATH/TO/FOLDER")
17:32, 15 May 2025 Hwang talk contribs changed group membership for Hwang from bureaucrat, editors and administrator to bureaucrat, editors, administrator and interface administrator
17:32, 15 May 2025 Hwang talk contribs changed group membership for Patrick from automoderated user, editors and administrator to automoderated user, editors, administrator and interface administrator
18:49, 14 May 2025 Hwang talk contribs changed group membership for Melodie from automoderated user and editors to automoderated user, editors and administrator
18:49, 14 May 2025 Hwang talk contribs changed group membership for Patrick from automoderated user and editors to automoderated user, editors and administrator
23:02, 13 May 2025 Patrick talk contribs created page Template:Sidebar with collapsible lists (Created page with "{{Sidebar with collapsible lists | name = {{subst:PAGENAME}} | pretitle = | title = | image = | templatestyles = | expanded = {{{expanded|}}} | heading1 = | list1name = | list1title = | list1 = | heading2 = | list2name = | list2title = | list2 =  | headingN =  | contentN = <!-- N is a number) may be used to include uncollapsib...")
23:02, 13 May 2025 Patrick talk contribs created page Sandbox (Created page with "{{Sidebar with collapsible lists | name = {{subst:PAGENAME}} | pretitle = | title = | image = | templatestyles = | expanded = {{{expanded|}}} | heading1 = | list1name = | list1title = | list1 = | heading2 = | list2name = | list2title = | list2 =  | headingN =  | contentN = <!-- N is a number) may be used to include uncollapsib...")
23:01, 13 May 2025 Patrick talk contribs created page User:Patrick (Created page with "sandbox")
22:18, 13 May 2025 Patrick talk contribs created page Testing (Created page with "=Common Questions and Concerns= ==Implants & Devices==")
22:15, 1 April 2025 Hwang talk contribs changed group membership for Patrick from editors to editors and automoderated user
22:12, 1 April 2025 Hwang talk contribs changed group membership for Patrick from (none) to editors (request from Patrick and Melodie)
22:04, 1 April 2025 User account Patrick talk contribs was created by Hwang talk contribs
18:05, 13 March 2025 Hwang talk contribs created page Hoffman2:Software Tools:Osprey (Created page with "==Osprey== 1. Start an interactive session by, for example qrsh -l h_rt=2:00:00,h_data=24G 2. In the work node, run the following commands module load matlab/R2020a export MATLABPATH=/u/project/CCN/apps/spm12 matlab The command "matlab" will open Matlab GUI interface 3. Install Toolboxes")
17:57, 3 December 2024 Jonathan talk contribs created page File:Matlab install.png
17:57, 3 December 2024 Jonathan talk contribs uploaded File:Matlab install.png
17:53, 3 December 2024 Jonathan talk contribs created page File:Matlab login.png
17:53, 3 December 2024 Jonathan talk contribs uploaded File:Matlab login.png
17:50, 3 December 2024 Jonathan talk contribs created page Matlab licenses (Created page with "= Getting Your Matlab License = == Access the Portal == # Go to [https://www.mathworks.com/academia/tah-portal/ucla-31454052.html MathWorks Portal] # Click "Sign In" (top right) # Use your mednet login == Select Your License == # Find the "Licenses" section # Choose your license type # Accept the license agreement == Download and Install == # Click "Download" # Select your operating system # Follow installation prompts # Login with your Mathworks account and the li...")
17:43, 3 December 2024 Jonathan talk contribs created page Licensing (Created blank page)
23:42, 17 October 2024 Hwang talk contribs created page File:Incidental finding report flow.png (Incidental finding report flow chart)
23:42, 17 October 2024 Hwang talk contribs uploaded File:Incidental finding report flow.png (Incidental finding report flow chart)
00:12, 17 October 2024 Hwang talk contribs created page File:Incidental finding.png
00:12, 17 October 2024 Hwang talk contribs uploaded File:Incidental finding.png
00:46, 12 September 2024 Hwang talk contribs created page Incidental Finding Report Tool (Created page with "== Incidental Finding Report Tool ==")
22:10, 14 August 2024 Hwang talk contribs created page Hoffman2:Scripts:gen movie.py (Created page with "==Purpose== To convert a 3D MRI image in nifti format to a movie. ==Setup Environment== To use this script, you need to load Anaconda module first and use conda environment ccn_py37<br> ccn_py37 contains nibabel which is need to read nifti files. ffmpeg is also needed for this script to run. module load anaconda3 conda activate /u/project/CCN/apps/conda/rh7/ccn_py37 module load ffmpeg/5.0.1 ==Usage/Help== To see the usage of this script ./gen_movie.py --help...")
20:15, 16 July 2024 Melodie talk contribs created page MR-Safe Glasses (Created page with "===Cleaning Glasses=== There are supplies (glass-cleaning solution, wipes) for cleaning the MR-safe glasses in the same cabinet where the glasses are stored. Please use them, not the Lysol wipes, to clean the glasses without damaging them. ===Lensometer=== A tool for measuring the prescription on an eyeglass lens. * This is stored in a small, rectangular box in the cabinet with the MR glasses. It is a white box under the cleaning wipes (Image 1 below). * Open the box an...")
21:33, 17 January 2024 Melodie talk contribs created page File:AVbox-min.png
21:33, 17 January 2024 Melodie talk contribs uploaded File:AVbox-min.png
17:02, 13 December 2023 Jonathan talk contribs created page Hoffman2:Software Tools:dmriprep (Created page with "===dmriprep=== module load apptainer singularity exec /u/project/CCN/apps/dmriprep/dfmriprep.sif dmriprep -h #will list program arguments singularity exec /u/project/CCN/apps/dmriprep/dfmriprep.sif data/bids_root/ out/ participant -w work/ Comprehensive documentation on dmriprep can be found at: https://www.nipreps.org/dmriprep/usage.html#usage")
15:49, 13 December 2023 Jonathan talk contribs created page Hoffman2:Software Tools:DSI Studio (Created page with "Log in via NoMachine module load singularity singularity exec dsistudio_2023.07.08.sif dsi_studio")
23:53, 11 December 2023 Jonathan talk contribs created page Hoffman2:Software Tools:HCPBench (Created page with "If you are experiencing crashing trying to load hcp (mesa or other related crashing errors) do the following: cd ~ wget https://www.humanconnectome.org/storage/app/media/workbench/workbench-rh_linux64-v1.5.0.zip unzip workbench-rh_linux64-v1.5.0.zip cd workbench/exe_rh_linux64/ ./wb_view")
18:12, 22 August 2023 Jonathan talk contribs created page Hoffman2:Software Tools:FSL MRS (Created blank page)
19:36, 23 June 2023 Jaredgil talk contribs created page File:FirmmTablet.png (Photo of FIRMM tablet screen.)
19:36, 23 June 2023 Jaredgil talk contribs uploaded File:FirmmTablet.png (Photo of FIRMM tablet screen.)
16:06, 8 June 2023 Jaredgil talk contribs created page File:AddProjInfo.png (Project information form on the SISTAT site.)
16:06, 8 June 2023 Jaredgil talk contribs uploaded File:AddProjInfo.png (Project information form on the SISTAT site.)
23:33, 6 June 2023 Hwang talk contribs deleted page File:Ica.png (for testing)
23:32, 6 June 2023 Hwang talk contribs created page File:Ica.png
23:32, 6 June 2023 Hwang talk contribs uploaded File:Ica.png

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