User contributions for Jonathan
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13 December 2023
- 17:1817:18, 13 December 2023 diff hist −14 Hoffman2:Software Tools:dmriprep →dmriprep current
- 17:1517:15, 13 December 2023 diff hist −5 Hoffman2:Software Tools:dmriprep →dmriprep
- 17:1517:15, 13 December 2023 diff hist +260 Hoffman2:Software Tools:dmriprep →dmriprep
- 17:0217:02, 13 December 2023 diff hist +9 Hoffman2:Software Tools:dmriprep →dmriprep
- 17:0217:02, 13 December 2023 diff hist +352 N Hoffman2:Software Tools:dmriprep Created page with "===dmriprep=== module load apptainer singularity exec /u/project/CCN/apps/dmriprep/dfmriprep.sif dmriprep -h #will list program arguments singularity exec /u/project/CCN/apps/dmriprep/dfmriprep.sif data/bids_root/ out/ participant -w work/ Comprehensive documentation on dmriprep can be found at: https://www.nipreps.org/dmriprep/usage.html#usage"
- 16:5916:59, 13 December 2023 diff hist +308 Hoffman2:Software Tools No edit summary current
- 16:2116:21, 13 December 2023 diff hist −3 Hoffman2:Software Tools:DSI Studio →DSI Studio current
- 16:2116:21, 13 December 2023 diff hist +22 Hoffman2:Software Tools:DSI Studio →DSI Studio
- 16:2016:20, 13 December 2023 diff hist +182 Hoffman2:Software Tools:DSI Studio →DSI Studio
- 15:5015:50, 13 December 2023 diff hist +2 Hoffman2:Software Tools:DSI Studio →DSI Studio
- 15:4915:49, 13 December 2023 diff hist +18 Hoffman2:Software Tools:DSI Studio No edit summary
- 15:4915:49, 13 December 2023 diff hist +98 N Hoffman2:Software Tools:DSI Studio Created page with "Log in via NoMachine module load singularity singularity exec dsistudio_2023.07.08.sif dsi_studio"
- 15:4815:48, 13 December 2023 diff hist +46 Hoffman2:Software Tools →DSI Studio
12 December 2023
- 00:1000:10, 12 December 2023 diff hist −1 Hoffman2:Software Tools →DSI Studio
- 00:1000:10, 12 December 2023 diff hist +330 Hoffman2:Software Tools No edit summary
- 00:0100:01, 12 December 2023 diff hist −24 Hoffman2:Software Tools:HCPBench No edit summary current
11 December 2023
- 23:5823:58, 11 December 2023 diff hist −19 Hoffman2:Software Tools →HCP Benchwork
- 23:5723:57, 11 December 2023 diff hist +58 Hoffman2:Software Tools:HCPBench No edit summary
- 23:5323:53, 11 December 2023 diff hist +289 N Hoffman2:Software Tools:HCPBench Created page with "If you are experiencing crashing trying to load hcp (mesa or other related crashing errors) do the following: cd ~ wget https://www.humanconnectome.org/storage/app/media/workbench/workbench-rh_linux64-v1.5.0.zip unzip workbench-rh_linux64-v1.5.0.zip cd workbench/exe_rh_linux64/ ./wb_view"
- 23:4923:49, 11 December 2023 diff hist +61 Hoffman2:Software Tools →HCP Benchwork
24 October 2023
- 18:3818:38, 24 October 2023 diff hist −27 Hoffman2:Software Tools:NDATools →Load modules current
19 October 2023
- 22:1922:19, 19 October 2023 diff hist −1 Staglin MR Suite No edit summary
11 October 2023
- 19:4219:42, 11 October 2023 diff hist −109 Hoffman2:Software Tools:Fix →Use Fix in Hoffman current
- 19:3219:32, 11 October 2023 diff hist −174 Hoffman2:Software Tools:BrainAgeR No edit summary current
22 August 2023
- 18:1918:19, 22 August 2023 diff hist +263 Hoffman2:Software Tools:FMRIprep No edit summary current
- 18:1618:16, 22 August 2023 diff hist +215 Hoffman2:Software Tools:FSL MRS No edit summary current
- 18:1218:12, 22 August 2023 diff hist 0 N Hoffman2:Software Tools:FSL MRS Created blank page
- 18:1118:11, 22 August 2023 diff hist +44 Hoffman2:Software Tools →FSL_MRS
- 17:1617:16, 22 August 2023 diff hist +395 Hoffman2:Software Tools No edit summary
- 17:1017:10, 22 August 2023 diff hist +72 Hoffman2:Software Tools →FMRIprep
6 April 2023
- 16:5616:56, 6 April 2023 diff hist +203 Hoffman2 maintenance and Issues →Issues and Solutions current
10 March 2023
- 01:0301:03, 10 March 2023 diff hist +54 Hoffman2:Software Tools:ggseg →From a Hoffman2 node current
- 01:0201:02, 10 March 2023 diff hist +73 Hoffman2:Software Tools →ggseg
- 00:5700:57, 10 March 2023 diff hist +601 N Hoffman2:Software Tools:ggseg Created page with "==From a Hoffman2 node== Load the required modules: <pre> module load R/4.2.2 module load anaconda3/2022.05 module load freesurfer/7.3.2 module load proj/7.1.1 module loa..."
- 00:5700:57, 10 March 2023 diff hist −1 Hoffman2:Software Tools →ggseg
- 00:5600:56, 10 March 2023 diff hist −320 Hoffman2:Software Tools →ggseg
- 00:5400:54, 10 March 2023 diff hist +252 Hoffman2:R:ggsegs →From a Hoffman2 node current
- 00:5000:50, 10 March 2023 diff hist +666 Hoffman2:Software Tools No edit summary
27 February 2023
- 21:0921:09, 27 February 2023 diff hist +70 Hoffman2 →R current
- 21:0421:04, 27 February 2023 diff hist +351 N Hoffman2:R:ggsegs Created page with " ==From a Hoffman2 node== module R/4.2.2 anaconda3/2022.05 freesurfer/7.3.2 proj/7.1.1 gdal/3.1.3 export PATH=$PATH:/u/project/CCN/apps/conda/rh7/R4.2.2_ggseg:/u/project/CC..."
14 February 2023
- 00:1600:16, 14 February 2023 diff hist +466 Hoffman2 maintenance and Issues →Issues and Solutions
- 00:1300:13, 14 February 2023 diff hist +1 Hoffman2:Software Tools No edit summary
- 00:1300:13, 14 February 2023 diff hist −250 Hoffman2:Software Tools No edit summary
- 00:0900:09, 14 February 2023 diff hist +331 Hoffman2:Software Tools No edit summary
19 August 2022
- 18:2418:24, 19 August 2022 diff hist +1 Hoffman2:Accessing the Cluster →GUI-Enabled SSH current
- 18:2218:22, 19 August 2022 diff hist +7 Hoffman2:Accessing the Cluster →GUI-Enabled SSH
- 18:2118:21, 19 August 2022 diff hist +120 Hoffman2:Accessing the Cluster →GUI-Enabled SSH