Principles of Neuroimaging B - 2015: Difference between revisions
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===Spectroscopy. ''Speaker:'' [http://radiology.ucla.edu/body.cfm?id=48&action=detail&ref=65 Albert Thomas]=== | ===Spectroscopy. ''Speaker:'' [http://radiology.ucla.edu/body.cfm?id=48&action=detail&ref=65 Albert Thomas]=== | ||
Handouts distributed in class | Handouts distributed in class | ||
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::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 ''"Compressed Sensing"'', D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006] One of the more accessible formal discussions of CS | ::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 ''"Compressed Sensing"'', D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006] One of the more accessible formal discussions of CS | ||
::[http://dsp.rice.edu/cs Rice University Compressed Sensing Resources]. A repository of scholarly work on CS. | ::[http://dsp.rice.edu/cs Rice University Compressed Sensing Resources]. A repository of scholarly work on CS. | ||
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Revision as of 05:29, 24 January 2015
Principles of Neuroimaging B, Winter, 2015 - Class Schedule and Syllabus
Week 1 - MRI and fMRI
Monday 1/5/15
- MRI II Speaker: Cohen
Magnetic Resonance Imaging (MRI) is probably the most influential and most flexible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies
OUTLINE Required Readings
- MRI Slides
- These notes by Joseph Hornak are highly professional and complete coverage of MRI.
- eMRI is another excellent online MRI learning resource
- Erwin Hahn - Spin Echoes: Essential reading for the MRI community
above: Figure 1 from Hahn, 1950
Suggested Further Reading
Wednesday 1/7/15
- fMRI and MotionSpeaker: Cohen
Week 2 - Artifacts, Image Quality, Diffusion
Monday 1/1215
- Artifacts Speaker: Cohen
Wednesday 1/14/15
- Diffusion Physics Speaker: Ben Ellingson
Required Readings Slides should be up soon.
- Ben Ellingson Diffusion Slides uploaded 3/14/14
Suggested Further Reading
- Sadly, the library does not have a subscription for the journals below (Mark has copies on reserve in his office):
Week 3 - Holiday and a canceled class
Monday 1/19/15
Martin Luther King Day
Wednesday 1/21/15
Class canceled due to other academic commitments. Sorry
Week 4 - Optics, SQUIDs MRI Contrast
Monday 1/26/15
Optics I. Speaker: Zachary Taylor
The overall goal of this lecture is to establish that: - Physical constants have tangible meanings - Plane waves form a physically unrealizable but extremely good approximation to real systems - Boundaries bend light - Physical constants, plane wave mechanics, and boundaries can be used to describe the operation of a lens - The PSF gives a good indication of the overall performance of an imaging system - All of these concepts have analogues in other areas of engineering (ie circuits, mechanical vibrations, etc.)''
Outline:
- Constitutive parameters (ε, μ, η, n, etc.)
- Plane wave basics
- Plane waves at boundaries
- Lenses
- Advanced imaging properties of lenses
- Point spread function.
Required Readings Zach has very kindly agreed to post his Optics lecture notes. Suggested Further Reading
Wednesday 1/28/15
SQUIDs and MRI Contrast Agents. Speaker: Massoud Akhtari
Week 5. Optics and New Optical Methods
==Monday 2/2/15
- Optics II. Speaker: Zachary Taylor
Required Readings
- Continued from prior week
Wednesday 2/4/15 - Trans-blood and TeraHertz Imaging Speaker: Warren Grundfest
Required Readings
Week 6 Ultrasound and Optogenetics
Monday 2/9/15
Ultrasound. Speaker: George Saddik
Required Readings
Wednesday 2/11/15
Optogenetics. Speaker: Tom Otis
Required Readings
Week 7 PET
Monday 2/16/15
President's Day Vacation - No Class
Wednesday 2/18/15
Positron Emission Tomography. Speaker: Magnus Dahlboun
Handouts distributed in class.
Week 8 PET and Spectroscopy
Monday 2/23/15
PET applications. Speaker: Edythe London
Wednesday 2/25/15
- Spectroscopy Speaker: Joe O'Neill
Required Readings
Week 9 Transcranial Magnetostimulation and Brain Stimulation
Monday 3/2/15
TMS. Speaker: Allan Wu
'Required Readings
Suggested Further Reading Once upon a time we demonstrated that this sort of magnetic stimulation can take place in the MRI machines:
Wednesday 3/4/15
PET applications. Speaker: Edythe London
Week 10
Monday 3/9/15
Required Readings
Wednesday 3/11/15
Required Readings