Hoffman2:Software Tools:FMRIprep

FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data

Official Website

Fmriprep Command Line Usage

From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.

module load singularity
singularity run --cleanenv /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif \
path/to/data/dir path/to/output/dir \
participant --participant-label label

From version 23.1.3, FMRIprep is provided through Apptainer

module load apptainer/1.2.2
apptainer run --cleanenv /u/project/CCN/apps/fmriprep/rh7/23.1.3/23.1.3-fmriprep.sif \
path/to/data/dir path/to/output/dir \
participant --participant-label label