User contributions for Hwang
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15 October 2021
- 18:0818:08, 15 October 2021 diff hist +42 Hoffman2 maintenance and Issues →Update date: 2021.10.15
- 18:0718:07, 15 October 2021 diff hist +86 Hoffman2 maintenance and Issues No edit summary
- 18:0418:04, 15 October 2021 diff hist +2 Hoffman2 maintenance and Issues →Update date: 2021.10.15
- 18:0018:00, 15 October 2021 diff hist +18 Hoffman2 maintenance and Issues →Update date: 2021.10.15
- 18:0018:00, 15 October 2021 diff hist 0 Hoffman2 maintenance and Issues No edit summary
- 17:5917:59, 15 October 2021 diff hist +6 Hoffman2 maintenance and Issues →Update date: 2021.10.15
- 17:5817:58, 15 October 2021 diff hist +13 Hoffman2 maintenance and Issues →2021.10.15
- 17:5717:57, 15 October 2021 diff hist +945 N Hoffman2 maintenance and Issues Created page with "== Issues and Solutions == === 2021.10.15 === Here's a list of the known issues after Hoffman2 maintenance Known issue 1. x2go and noMachine interface looks froze or in fu..."
- 17:3217:32, 15 October 2021 diff hist −8 Main Page →Classes
- 17:3217:32, 15 October 2021 diff hist +46 Main Page →Classes
- 17:3117:31, 15 October 2021 diff hist −120 Hoffman2 No edit summary
- 17:3017:30, 15 October 2021 diff hist +119 Hoffman2 No edit summary
- 17:2717:27, 15 October 2021 diff hist −21 Main Page →Classes
- 17:2717:27, 15 October 2021 diff hist +21 Main Page →Classes
7 October 2021
- 17:3917:39, 7 October 2021 diff hist −13 Hoffman2:Scripts:dcmheader.py →Setup Environment current
1 October 2021
16 August 2021
- 23:0523:05, 16 August 2021 diff hist +7 Hoffman2:Software Tools No edit summary
- 23:0023:00, 16 August 2021 diff hist +43 Hoffman2:Software Tools →Pytorch
- 22:5922:59, 16 August 2021 diff hist +12 Hoffman2:Software Tools →ccn_py37
- 22:5822:58, 16 August 2021 diff hist +456 N Hoffman2:Software Tools:ccn py37 Created page with "==ccn_py37== This is a Conda Virtual environment installed with following modules nibabel, nilearn, pydicom, pandas, scikit-learn, scipy Start a CentOS 7 node qrsh –l r..." current
- 22:5422:54, 16 August 2021 diff hist +50 Hoffman2:Software Tools →ccn_py37
- 22:5322:53, 16 August 2021 diff hist +77 Hoffman2:Software Tools →ccn_py37
- 22:5222:52, 16 August 2021 diff hist −26 Hoffman2:Software Tools →ccn_py37
- 22:5122:51, 16 August 2021 diff hist +34 Hoffman2:Software Tools →Pytorch
- 22:5022:50, 16 August 2021 diff hist +227 Hoffman2:Software Tools No edit summary
- 22:4622:46, 16 August 2021 diff hist +275 Hoffman2:Software Tools No edit summary
- 22:2322:23, 16 August 2021 diff hist −2 Hoffman2:Software Tools:FastSurfer →FastSurfer current
- 22:2322:23, 16 August 2021 diff hist +103 Hoffman2:Software Tools:FastSurfer →FastSurfer
- 22:2222:22, 16 August 2021 diff hist +14 Hoffman2:Software Tools:Profumo →Profumo current
- 22:2122:21, 16 August 2021 diff hist +93 Hoffman2:Software Tools:CentOS 7 →CCN modules for CentOS 7 current
- 22:1722:17, 16 August 2021 diff hist 0 Hoffman2:Software Tools:FastSurfer →FastSurfer
- 22:1722:17, 16 August 2021 diff hist +59 Hoffman2:Software Tools:FastSurfer →FastSurfer
- 22:1622:16, 16 August 2021 diff hist −1 Hoffman2:Software Tools:FastSurfer →FastSurfer
- 22:1622:16, 16 August 2021 diff hist +564 N Hoffman2:Software Tools:FastSurfer Created page with "===FastSurfer=== This current version requires CentOS 7 work node and conda environment. module load anaconda3/2020.11 . /u/local/apps/anaconda3/2020.11/etc/profile.d/con..."
- 22:0922:09, 16 August 2021 diff hist −9 Hoffman2:Software Tools →FastSurfer
- 22:0822:08, 16 August 2021 diff hist 0 Hoffman2:Software Tools →FastSurfer
- 22:0822:08, 16 August 2021 diff hist +54 Hoffman2:Software Tools No edit summary
12 August 2021
- 22:3822:38, 12 August 2021 diff hist +47 Hoffman2:Singularity →Convert Docker image for Singularity current
- 22:3722:37, 12 August 2021 diff hist +2 Hoffman2:Singularity →Convert Docker image for Singularity
- 22:3722:37, 12 August 2021 diff hist +200 Hoffman2:Singularity →Singularity
- 22:3622:36, 12 August 2021 diff hist +2 Hoffman2:Singularity →How to use Singularity
- 22:3622:36, 12 August 2021 diff hist +39 Hoffman2:Singularity →How to use Singularity
- 22:3522:35, 12 August 2021 diff hist +123 Hoffman2:Singularity →How to use Singularity
- 22:3322:33, 12 August 2021 diff hist +394 Hoffman2:Singularity →How to use Singularity
- 22:2822:28, 12 August 2021 diff hist +106 Hoffman2:Singularity →How to use Singularity
- 22:1522:15, 12 August 2021 diff hist +3 Hoffman2:Singularity →Singularity
- 22:1422:14, 12 August 2021 diff hist +204 N Hoffman2:Singularity Created page with " == Singularity == Singularity is a type of container technology, is provided in Hoffman2 currently. ===How to use Singularity=== In a CentOs 7 Node, load Singularity module..."
- 22:1422:14, 12 August 2021 diff hist −188 Hoffman2 →Singularity
- 22:1322:13, 12 August 2021 diff hist +188 Hoffman2 →Singularity
- 22:1322:13, 12 August 2021 diff hist −1 Hoffman2:Software Tools:Profumo →Profumo
- 22:1022:10, 12 August 2021 diff hist +48 Hoffman2 No edit summary
- 22:0722:07, 12 August 2021 diff hist +27 Hoffman2:Software Tools:Profumo →Profumo
- 22:0722:07, 12 August 2021 diff hist +62 Hoffman2:Software Tools:Profumo No edit summary
- 22:0122:01, 12 August 2021 diff hist +83 Hoffman2:Software Tools:CentOS 7 →CCN Apps for CentOS 7
- 21:5721:57, 12 August 2021 diff hist +14 Hoffman2:Software Tools:CentOS 7 →Hoffman CentOS 7
- 21:5721:57, 12 August 2021 diff hist +1 Hoffman2:Software Tools:CentOS 7 →Hoffman CentOS 7
- 21:5621:56, 12 August 2021 diff hist +1 Hoffman2:Software Tools:CentOS 7 →Request a CentOS 7 node with batch mode
- 21:5521:55, 12 August 2021 diff hist +331 Hoffman2:Software Tools:CentOS 7 →Hoffman CentOS 7
- 21:5121:51, 12 August 2021 diff hist +93 Hoffman2:Software Tools:CentOS 7 →CCN Apps for CentOS 7
- 21:5021:50, 12 August 2021 diff hist +596 N Hoffman2:Software Tools:CentOS 7 Created page with " == Hoffman CentOS 7 == At this point, partial of Hoffman's work nodes are upgraded to CentOS 7. === CCN Apps for CentOS 7=== To use CCN applications in Hoffman2 ==== For i..."
- 21:4421:44, 12 August 2021 diff hist −4 Hoffman2:Software Tools →FreeSurfer
- 21:4421:44, 12 August 2021 diff hist +28 Hoffman2:Software Tools →FreeSurfer
- 21:4121:41, 12 August 2021 diff hist +6 Hoffman2:Software Tools:FMRIprep No edit summary
- 21:4121:41, 12 August 2021 diff hist +1,493 N Hoffman2:Software Tools:FMRIprep Created page with " FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data [https://fmriprep.org/en/stable/ Official Website] [https://fmriprep.org/en/stable/usage.html Fmriprep Command Line..."
- 21:4121:41, 12 August 2021 diff hist −1 Hoffman2:Software Tools →FMRIprep
- 21:3821:38, 12 August 2021 diff hist +2 Hoffman2:Software Tools →FreeSurfer
- 21:3821:38, 12 August 2021 diff hist +77 Hoffman2:Software Tools →FreeSurfer
11 August 2021
- 23:3623:36, 11 August 2021 diff hist +263 Hoffman2:Software Tools: FMRIprep No edit summary
- 23:3023:30, 11 August 2021 diff hist +11 Hoffman2:Software Tools →FMRIprep
- 23:3023:30, 11 August 2021 diff hist +10 Hoffman2:Software Tools →FMRIprep
- 23:2923:29, 11 August 2021 diff hist 0 Hoffman2:Software Tools →FMRIprep
- 23:2923:29, 11 August 2021 diff hist −33 Hoffman2:Software Tools →FMRIprep
- 23:2823:28, 11 August 2021 diff hist +78 Hoffman2:Software Tools →FMRIprep
- 23:2723:27, 11 August 2021 diff hist −78 Hoffman2:Software Tools →FMRIprep
- 23:2723:27, 11 August 2021 diff hist +75 Hoffman2:Software Tools →FMRIprep
- 23:2523:25, 11 August 2021 diff hist +2 Hoffman2:Software Tools:Profumo →Profumo
- 23:2523:25, 11 August 2021 diff hist +2 Hoffman2:Software Tools:Profumo →Profumo
- 23:2523:25, 11 August 2021 diff hist +239 N Hoffman2:Software Tools:Profumo Created page with "==Profumo== This module is provided using Singularity. Since Singularity requires CentOS 7, the following should be run on a CentOS 7 node. module load singularity singulari..."
- 23:2323:23, 11 August 2021 diff hist −2 Hoffman2:Software Tools →Profumo
- 23:2223:22, 11 August 2021 diff hist +1 Hoffman2:Software Tools →Profumo
- 23:2223:22, 11 August 2021 diff hist +202 Hoffman2:Software Tools →Profumo
- 23:2023:20, 11 August 2021 diff hist +44 Hoffman2:Software Tools →Profumo
- 23:2023:20, 11 August 2021 diff hist +73 Hoffman2:Software Tools No edit summary
- 23:1723:17, 11 August 2021 diff hist +211 N Hoffman2:Software Tools:Enigma Created page with "==ENIGMA VBA== This module requires Matlab R2007a (v7.4) or above and SPM12 module load matlab module load enigma Add this following path in Matlab from “Add PATH”...." current
- 23:1623:16, 11 August 2021 diff hist −1 Hoffman2:Software Tools →ENIGMA
- 23:1523:15, 11 August 2021 diff hist +3,005 N Hoffman2:Software Tools:NDATools Created page with "[https://github.com/NDAR/nda-tools More information of NDATools] NDATools is for downloadig or uploading data to NDA. Here is how to use it in Hoffman to download data. ==S..."
- 23:1523:15, 11 August 2021 diff hist −1 Hoffman2:Software Tools →NDATools
- 23:1523:15, 11 August 2021 diff hist +135 N Hoffman2:Software Tools:OpenSmile Created page with "==OpenSmile== This module needs to run in CentOS 7. To use it, module load gcc/7.5.0 module load mplayer/1.4 module load opensmile" current
- 23:1423:14, 11 August 2021 diff hist −1 Hoffman2:Software Tools →OpenSmile
- 23:1323:13, 11 August 2021 diff hist +135 N Hoffman2:Software Tools: OpenSmile Created page with "==OpenSmile== This module needs to run in CentOS 7. To use it, module load gcc/7.5.0 module load mplayer/1.4 module load opensmile" current
- 23:1023:10, 11 August 2021 diff hist +19 Hoffman2:Software Tools →kwave
- 23:1023:10, 11 August 2021 diff hist +1 Hoffman2:Software Tools →OpenSmile
- 23:1023:10, 11 August 2021 diff hist +43 Hoffman2:Software Tools →OpenSmile
- 23:0123:01, 11 August 2021 diff hist +20 Hoffman2:Software Tools: Enigma →ENIGMA VBA current
- 23:0123:01, 11 August 2021 diff hist +2 Hoffman2:Software Tools: Enigma →ENIGMA VBA
- 23:0023:00, 11 August 2021 diff hist +1 Hoffman2:Software Tools: Enigma →ENIGMA VBA
- 22:5922:59, 11 August 2021 diff hist −20 Hoffman2:Software Tools: Enigma →ENIGMA VBA
- 22:5922:59, 11 August 2021 diff hist +1 Hoffman2:Software Tools: Enigma →ENIGMA VBA
- 22:5922:59, 11 August 2021 diff hist +25 Hoffman2:Software Tools: Enigma →ENIGMA VBA
- 22:5422:54, 11 August 2021 diff hist +4 Hoffman2:Software Tools: Enigma No edit summary