Principles of Neuroimaging B - 2013

Principles of Neuroimaging B, Winter, 2012 - Class Schedule and Syllabus

Main course page for Principles of Neuroimaging (2012-13)

M284A Principles of Neuroimaging A

• Notes for Instructors

Week 1 Magnetic Resonance Imaging

Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies

Monday 1/7/13 - MRI. Speaker: Cohen

OUTLINE Required Readings

• MRI Slides
• These notes by Joseph Hornak are highly professional and complete coverage of MRI.
• eMRI is another excellent online MRI learning resource
• Erwin Hahn - Spin Echoes: Essential reading for the MRI community

above: Figure 1 from Hahn, 1950

Suggested Further Reading

File:PSatSeq.jpg

Wednesday 1/9/13 - MRI II. Speaker: Cohen

OUTLINE Required Readings

• MRI Slides (same as 1/7/13)

Suggested Further Reading

• READING

Week 2 MRI Applications

Monday 1/14/13 - Functional MRI. Speaker: Cohen

Videos - Please Right Click and Save rather than Stream

• Lecture Part 1
• Lecture Part 2

Wednesday 1/16/13 - Functional MRI. Speaker: Cohen

OUTLINE Required Readings

Suggested Further Reading

• Hageman DTI Slides
• Hageman DTI Notes 2/26/12
• Diffusion tensor imaging of cerebral white matter: a pictorial review of physics, fiber tract anatomy, and tumor imaging patterns AJNR Am J Neuroradiol. 2004 Mar;25(3):356-69

Sadly, the library does not have a subscription for the journals below (Mark has copies on reserve in his office):

• Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J Magn Reson B. 1996 Jun;111(3):209-19
• Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron. 2006 Sep 7;51(5):527-39

Suggested Further Reading

• READING

Week 4 PET Imaging

Monday 1/28/13 - PET. Speaker: Magnus Dahlboun

• Problem Set 1 Due 02/06/2013 by 5PM

Wednesday 1/30/13 - PET. Speaker: Edythe London

• Dr. Edythe London PET Slides

Week 7

Wednesday 2/20/13 - Transcranial Magneto Stimulation (TMS). Speaker: Allan Wu

'Required Readings

• Wu 2013 Lecture slides
• TMS Safety and Ethics - Rossi, 2009
• | M Sandrini, C Umilta and E Rusconi, “The use of transcranial magnetic stimulation in cognitive neuroscience: a new synthesis of methodological issues.” Neurosci Biobehav Rev, 35(3): p. 516-536. 2011

Suggested Further Reading

• Handout for Wu TMS Lecture, 2010

Once upon a time we demonstrated that this sort of magnetic stimulation can take place in the MRI machines:

• MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine, 14(2): p. 409-414. 1990

Week 8

Wednesday 2/27/13 - Simultaneous multimodal neuroimaging. Speaker: Mark Cohen

Room CHS 13-105, Near the biomedical library

• Multimodal neuroimaging lecture slides

Week 9

Monday 3/4/13 - Multi-voxel Pattern Analysis . Speaker: Jesse Rissman

• Multi-voxel Pattern Analysis Lecture Slides

Wednesday 3/6/13 - . Speaker: Martin Monti

• Advanced Experimental Design Lecture Slides

Week 10

Wednesday 3/13/13 - . Speaker: Agatha Lenartowicz

• EEG Neurophysiology Lecture Slides