Principles of Neuroimaging B - 2017: Difference between revisions
Jump to navigation
Jump to search
Alenartowicz (talk | contribs) No edit summary |
Alenartowicz (talk | contribs) No edit summary |
||
(25 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
Principles of Neuroimaging B, Winter, | Principles of Neuroimaging B, Winter, 2017 - Class Schedule and Syllabus | ||
== This schedule is a draft only and ''will'' change!== | == This schedule is a draft only and ''will'' change!== | ||
Line 19: | Line 19: | ||
:'''NOTE:''' if you subscribe for a Scribd account for a day, you can download as many documents as you like for one fee. | :'''NOTE:''' if you subscribe for a Scribd account for a day, you can download as many documents as you like for one fee. | ||
=Week 1: Magnetic Resonance Imaging | =Week 1: Magnetic Resonance Imaging: Fundamentals= | ||
Magnetic Resonance Imaging (MRI) is probably the most influential and most flexible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies | |||
==''Wednesday 1/ | OUTLINE | ||
===-MR | ''Required Readings'' | ||
:*[[media:MRIforPNIB2014_sm.pdf | MRI Slides]] | |||
:*[http://www.cis.rit.edu/htbooks/mri/ These notes] by Joseph Hornak are highly professional and complete coverage of MRI. | |||
:*[http://www.imaios.com/en/e-Courses/e-MRI eMRI] is another excellent online MRI learning resource | |||
:*[http://www.brainmapping.org/NITP/PNA/Readings/Hahn1950.pdf Erwin Hahn - Spin Echoes: ''Essential reading for the MRI community''] | |||
[[Image:HahnFig1.png]] | |||
''above'': Figure 1 from Hahn, 1950 | |||
''Suggested Further Reading'' | |||
[[image:PSatSeq.jpg|right]] | |||
''Required Readings'' | |||
:*[[media:MRIforPNIB2014_sm.pdf | MRI Slides]] | |||
==''Monday 1/9/17'' == | |||
===- MR Physics I. ''Speaker'': [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]=== | |||
==''Wednesday 1/11/17'' == | |||
===- MR Physics II. ''Speaker'': [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]=== | |||
=='' | =Week 2: MRI Techniques= | ||
=== | ==''Monday 1/16/17'' == | ||
===MLK Day No Class=== | |||
==''Wednesday 1/18/17'' == | |||
===- MR Spatial Encoding Q&A. ''Speaker'' Cameron Rodriguez=== | |||
=='' | =Week 3: MRI Applications = | ||
===- | ==''Monday 1/23/17'' == | ||
===- MR Pulse Sequences and Parameters ''Speaker'' [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]=== | |||
'' | ==''Wednesday 1/25/17'' == | ||
===- MR Applications (MR, fMRI, DTI, ASL, Spectroscopy). ''Speaker'' [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]=== | |||
=='' | =Week 4: Multimodal Imaging= | ||
===- | ==''Monday 1/30/17 CLASS IN SEMEL 67-415''== | ||
===- Multimodal I ''Speaker'' Cameron Rodriguez=== | |||
= | ==''Wednesday 2/1/17'' == | ||
===- Multimodal II ''Speaker'' Agatha Lenartowicz=== | |||
:*[[media:eegfmritalk.pdf | Lecture Slides]] | |||
:*[[media:chapter7.pdf | EEG Instrumentation]] | |||
:*[[media:chapter8.pdf | EEG Quality I]] | |||
:*[[media:chapter9.pdf | EEG Quality II]] | |||
:*[[media:chapter10.pdf | Image Quality]] | |||
== | =Week 5: Review = | ||
===- | ==''Monday 2/6/17''== | ||
===- Q&A Class === | |||
==''Wednesday 2/8/17''== | |||
=='' | ===- Midterm Review=== | ||
=== | |||
= | =MIDTERM= | ||
=='' | =Week 6: Image Processing= | ||
=== | ==''Monday 2/13/17'' == | ||
===cont. Midterm Review=== | |||
==''Wednesday 2/15/17'' == | |||
=='' | ===-Image Processing I. ''Speaker'' Cameron Rodriguez=== | ||
===- | |||
=='' | =Week 7: Image Analysis= | ||
=== | ==''Monday 2/20/17'' == | ||
===President’s Day Holiday No Class=== | |||
==''Wednesday 2/22/17'' == | |||
===- Image Processing II. ''Speaker'' Agatha Lenartowicz=== | |||
'' | =Week 8: Image Analysis Cont.= | ||
==''Monday 2/27/17 CLASS IN SEMEL 67-415'' == | |||
===Analysis I ''Speaker'' Agatha Lenartowicz=== | |||
==''Wednesday 3/1/17'' == | |||
===- Analysis II ''Speaker'' Agatha Lenartowicz=== | |||
'' | =Week 9: Brain Decoding= | ||
: | ==''Monday 3/6/17'' == | ||
===-ML I: Dimension Reduction, Machine Learning Fundamentals ''Speaker'' Wesley Kerr, Ph.D.=== | |||
==''Wednesday 3/8/17'' == | |||
===- MLII: Machine Learning cont. ''Speaker'' Wesley Kerr, Ph.D.=== | |||
=Week 10: Review= | =Week 10: Review= | ||
==''Monday 3/13/ | ==''Monday 3/13/17'' == | ||
===- | ===-TBD ''Speaker'' TBD=== | ||
==''Wednesday 3/15/ | ==''Wednesday 3/15/17'' == | ||
===-TBD=== | ===-Final Exam Review. ''Speaker'' TBD=== | ||
Line 130: | Line 134: | ||
''Required Readings'' - Please complete these readings prior to class. | ''Required Readings'' - Please complete these readings prior to class. | ||
:*[[media:M284B_perfusion-web.pdf | Dr. Wang's Handout]] | :*[[media:M284B_perfusion-web.pdf | Dr. Wang's Handout]] | ||
:*[http://www.cis.rit.edu/htbooks/mri/ These notes] by Joseph Hornak are highly professional and complete coverage of MRI.] | :*[http://www.cis.rit.edu/htbooks/mri/ These notes] by Joseph Hornak are highly professional and complete coverage of MRI.] | ||
:*[[media:M284B_perfusion-web.pdf | Dr. Wang's Handout]] | :*[[media:M284B_perfusion-web.pdf | Dr. Wang's Handout]] | ||
[[Image:HahnFig1.png]] | [[Image:HahnFig1.png]] | ||
''above'': Figure 1 from Hahn, 1950 | ''above'': Figure 1 from Hahn, 1950 | ||
''Suggested Further Reading'' | ''Suggested Further Reading'' | ||
:*[http://www.pnas.org/content/89/1/212.long Williams, PNAS 1992] | :*[http://www.pnas.org/content/89/1/212.long Williams, PNAS 1992] |
Latest revision as of 04:01, 9 February 2017
Principles of Neuroimaging B, Winter, 2017 - Class Schedule and Syllabus
This schedule is a draft only and will change!
Course Reading
Required Reading
- Signal Processing for Neuroscientists by Wim van Drongelen
- This can be found as a PDF on scribd.com, for a small fee of $8.99
Supplemental Reading
- Matlab for Neuroscientists
- Link for download found here for a small fee: http://www.scribd.com/doc/88212458/Matlab-Matlab-for-Neuroscientists
- Cartoon Guide to Statistics
- Link for download found here for a small fee: http://www.scribd.com/doc/148072668/Cartoon-Guide-to-Statistics
- NOTE: if you subscribe for a Scribd account for a day, you can download as many documents as you like for one fee.
Week 1: Magnetic Resonance Imaging: Fundamentals
Magnetic Resonance Imaging (MRI) is probably the most influential and most flexible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies
OUTLINE
Required Readings
- MRI Slides
- These notes by Joseph Hornak are highly professional and complete coverage of MRI.
- eMRI is another excellent online MRI learning resource
- Erwin Hahn - Spin Echoes: Essential reading for the MRI community
above: Figure 1 from Hahn, 1950
Suggested Further Reading
Required Readings