Principles of Neuroimaging B - 2017: Difference between revisions

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==''Wednesday 1/11/17'' ==
==''Wednesday 1/11/17'' ==
===- MR Physics II. ''Speaker'': [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]===
===- MR Physics II. ''Speaker'': [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]===


=Week 2: MRI Techniques=
=Week 2: MRI Techniques=
Line 49: Line 50:


==''Wednesday 1/18/17'' ==
==''Wednesday 1/18/17'' ==
===- MR Spatial Encoding Q&A. "Speaker" Cameron Rodriguez===
===- MR Spatial Encoding Q&A. ''Speaker'' Cameron Rodriguez===
 


=Week 3: MRI Applications =
=Week 3: MRI Applications =
==''Monday 1/23/17'' ==
==''Monday 1/23/17'' ==
===-MR Pulse Sequences ''Speaker'' [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]===
===- MR Pulse Sequences and Parameters ''Speaker'' [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]===


==''Wednesday 1/25/17'' ==
==''Wednesday 1/25/17'' ==
===-MR Applications (MR, fMRI, DTI, ASL, Spectroscopy). ''Speaker'' [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]===
===- MR Applications (MR, fMRI, DTI, ASL, Spectroscopy). ''Speaker'' [https://www.brainmapping.org/MarkCohen/aboutmark.html Mark Cohen]===


[[Image:PETfounders.png | right]]
[[Image:PET-ring.png | left]]


=Week 4: Non-MR Imaging=
=Week 4: Multimodal Imaging=
==''Monday 1/30/17'' ==
==''Monday 1/30/17 CLASS IN SEMEL 67-415''==
===- Optogenetics I. ''Speaker'' TBD===
===- Multimodal I ''Speaker'' Cameron Rodriguez===


==''Wednesday 2/1/17'' ==
==''Wednesday 2/1/17'' ==
===- Optogenetics II. ''Speaker'' TBD===
===- Multimodal II ''Speaker'' Agatha Lenartowicz===


''Required Readings'' - Please complete these readings prior to class.
:*[[media:eegfmritalk.pdf‎ | Lecture Slides]]
:*[[media:Golshani_NITP_2016.pdf | Dr. Golshani's Methods slides]]
:*[[media:chapter7.pdf‎ | EEG Instrumentation]]
:*[[media:PeymanResearchTalk.pdf | Dr. Golshani's Research slides]]
:*[[media:chapter8.pdf‎ | EEG Quality I]]
''Suggested Further Reading''
:*[[media:chapter9.pdf‎ | EEG Quality II]]
:*
:*[[media:chapter10.pdf‎ | Image Quality]]


=Week 5: Multimodal Imaging & Neuroimaging Data=
=Week 5: Review =
==''Monday 2/6/17'' ==
==''Monday 2/6/17''==
===- Multimodal Imaging ''Speaker'' TBD===
===- Q&A Class ===


==''Wednesday 2/8/17'' ==
==''Wednesday 2/8/17''==
===- Neuroimaging Data: Fundamentals. ''Speaker'' TBD===
===- Midterm Review===


=MIDTERM=
=MIDTERM=


=Week 6: Neuroimaging Data=
 
=Week 6: Image Processing=
==''Monday 2/13/17'' ==
==''Monday 2/13/17'' ==
===Midterm Review===
===cont. Midterm Review===


==''Wednesday 2/15/17'' ==
==''Wednesday 2/15/17'' ==
===-Multivariate Analyses: Dimension Reduction. ''Speaker'' TBD===
===-Image Processing I. ''Speaker'' Cameron Rodriguez===


=Week 7: Neuroimaging Data=
=Week 7: Image Analysis=
==''Monday 2/20/17'' ==
==''Monday 2/20/17'' ==
===President’s Day Holiday No Class===
===President’s Day Holiday No Class===


==''Wednesday 2/22/17'' ==
==''Wednesday 2/22/17'' ==
===- Multivariate Analyses: Brain Decoding ''Speaker'' TBD===
===- Image Processing II. ''Speaker'' Agatha Lenartowicz===


=Week 8: Practical Brain Decoding & Connectivity=
=Week 8: Image Analysis Cont.=
==''Monday 2/27/17'' ==
==''Monday 2/27/17 CLASS IN SEMEL 67-415'' ==
===Building a BCI System===
===Analysis I ''Speaker'' Agatha Lenartowicz===


==''Wednesday 3/1/17'' ==
==''Wednesday 3/1/17'' ==
===- Connectivity Fundamentals ''Speaker'' TBD===
===- Analysis II ''Speaker'' Agatha Lenartowicz===


=Week 9: Neuromodulation=
=Week 9: Brain Decoding=
==''Monday 3/6/17'' ==
==''Monday 3/6/17'' ==
===-TMS. ''Speaker'' TBD===
===-ML I: Dimension Reduction, Machine Learning Fundamentals ''Speaker'' Wesley Kerr, Ph.D.===


==''Wednesday 3/8/17'' ==
==''Wednesday 3/8/17'' ==
===- Ultrasound. ''Speaker'' TBD===
===- MLII: Machine Learning cont. ''Speaker'' Wesley Kerr, Ph.D.===
 
'Required Readings''
:* [[media:TMSSafetyAndEthics-Rossi.pdf | TMS Safety and Ethics - Rossi, 2009]]
:* [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T0J-50CV801-1&_user=4423&_coverDate=01%2F31%2F2011&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000059605&_version=1&_urlVersion=0&_userid=4423&md5=f9fa3c7d63942dfb3c74e047a1f848bc&searchtype=a | M Sandrini, C Umilta and E Rusconi, “''The use of transcranial magnetic stimulation in cognitive neuroscience: a new synthesis of methodological issues.''” '''Neurosci Biobehav Rev''',  '''35'''(3): p. 516-536. 2011]
 
''Suggested Further Reading''
Once upon a time we demonstrated that this sort of magnetic stimulation can take place in the MRI machines:
:*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine,  14(2): p. 409-414. 1990]
 
[[Image:Cetacean.png | right]]
:*[[media:US_Imaging_Systems_1.pdf | Ultrasound Slides (2016)]]
 
''Suggested Further Reading''
:* [[media:Culjat2010.pdf | A review of tissue substitutes for ultrasound imaging ]]
 


=Week 10: Review=
=Week 10: Review=
==''Monday 3/13/17'' ==
==''Monday 3/13/17'' ==
===-Final Exam Review. ''Speaker'' TBD===
===-TBD ''Speaker'' TBD===


==''Wednesday 3/15/17'' ==
==''Wednesday 3/15/17'' ==
===-TBD===
===-Final Exam Review. ''Speaker'' TBD===





Latest revision as of 04:01, 9 February 2017

Principles of Neuroimaging B, Winter, 2017 - Class Schedule and Syllabus

This schedule is a draft only and will change!

Back to main course page for Principles of Neuroimaging

Course Reading

Required Reading

Signal Processing for Neuroscientists by Wim van Drongelen
This can be found as a PDF on scribd.com, for a small fee of $8.99

Supplemental Reading

Matlab for Neuroscientists
Link for download found here for a small fee: http://www.scribd.com/doc/88212458/Matlab-Matlab-for-Neuroscientists
Cartoon Guide to Statistics
Link for download found here for a small fee: http://www.scribd.com/doc/148072668/Cartoon-Guide-to-Statistics
NOTE: if you subscribe for a Scribd account for a day, you can download as many documents as you like for one fee.

Week 1: Magnetic Resonance Imaging: Fundamentals

Magnetic Resonance Imaging (MRI) is probably the most influential and most flexible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies


OUTLINE Required Readings

HahnFig1.png above: Figure 1 from Hahn, 1950

Suggested Further Reading

Required Readings

Monday 1/9/17

- MR Physics I. Speaker: Mark Cohen

Wednesday 1/11/17

- MR Physics II. Speaker: Mark Cohen

Week 2: MRI Techniques

Monday 1/16/17

MLK Day No Class

Wednesday 1/18/17

- MR Spatial Encoding Q&A. Speaker Cameron Rodriguez

Week 3: MRI Applications

Monday 1/23/17

- MR Pulse Sequences and Parameters Speaker Mark Cohen

Wednesday 1/25/17

- MR Applications (MR, fMRI, DTI, ASL, Spectroscopy). Speaker Mark Cohen

Week 4: Multimodal Imaging

Monday 1/30/17 CLASS IN SEMEL 67-415

- Multimodal I Speaker Cameron Rodriguez

Wednesday 2/1/17

- Multimodal II Speaker Agatha Lenartowicz

Week 5: Review

Monday 2/6/17

- Q&A Class

Wednesday 2/8/17

- Midterm Review

MIDTERM

Week 6: Image Processing

Monday 2/13/17

cont. Midterm Review

Wednesday 2/15/17

-Image Processing I. Speaker Cameron Rodriguez

Week 7: Image Analysis

Monday 2/20/17

President’s Day Holiday No Class

Wednesday 2/22/17

- Image Processing II. Speaker Agatha Lenartowicz

Week 8: Image Analysis Cont.

Monday 2/27/17 CLASS IN SEMEL 67-415

Analysis I Speaker Agatha Lenartowicz

Wednesday 3/1/17

- Analysis II Speaker Agatha Lenartowicz

Week 9: Brain Decoding

Monday 3/6/17

-ML I: Dimension Reduction, Machine Learning Fundamentals Speaker Wesley Kerr, Ph.D.

Wednesday 3/8/17

- MLII: Machine Learning cont. Speaker Wesley Kerr, Ph.D.

Week 10: Review

Monday 3/13/17

-TBD Speaker TBD

Wednesday 3/15/17

-Final Exam Review. Speaker TBD