Hoffman2:Software Tools:ggseg: Difference between revisions
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(Created page with "==From a Hoffman2 node== Load the required modules: <pre> module load R/4.2.2 module load anaconda3/2022.05 module load freesurfer/7.3.2 module load proj/7.1.1 module loa...") |
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Load the library in R | Load the library in R | ||
<pre>library(ggseg)</pre> | |||
<pre>library(ggseg3d)</pre> | |||
<pre>library(ggsegExtra)</pre> | <pre>library(ggsegExtra)</pre> | ||
Latest revision as of 01:03, 10 March 2023
From a Hoffman2 node
Load the required modules:
module load R/4.2.2 module load anaconda3/2022.05 module load freesurfer/7.3.2 module load proj/7.1.1 module load gdal/3.1.3
Add the path
export PATH=$PATH:/u/project/CCN/apps/conda/rh7/R4.2.2_ggseg:/u/project/CCN/apps/R_libs/rh7/4.2.2_ggseg
Activate the conda environment:
conda activate /u/project/CCN/apps/conda/rh7/R4.2.2_ggseg
Launch R with the command "R" and enter the following:
.libPaths("/u/project/CCN/apps/R_libs/rh7/4.2.2_ggseg")
Load the library in R
library(ggseg)
library(ggseg3d)
library(ggsegExtra)