Back to all things Hoffman2
There is a CCN usergroup on Hoffman2 which is maintained for groups doing Neuroimaging work at UCLA. Tools like FSL, FreeSurfer, AFNI and Nibabel are maintained for this group separate from normal Hoffman2 programs. In order to take advantage of these tools, you need to load the modules into the interactive mode or listed in your batch mode scripts.
module load appname/version
Below is a list of the available software tools. We will do our best to update it as changes are made.
AFNI
Official Webste
19.0.15 |
2019.02.20 |
New
|
2017.08.09-17.2.07 |
2017.2.07 |
Current
|
2016.10.18-16.3.11 |
2016.11.20 |
|
2011.12.21.1014 |
2012-03-19 |
|
ANTS
Official Website
ants-2.2.0 |
2019.03.25 |
New
|
ants-2.1.0-redhat |
2015.01.23 |
Current
|
ASHS
Official Website
20180720 |
2018.07.20 |
|
2017-02 |
2017.06.08 |
|
Rev-103 |
2016.02.24 |
Current
|
BrainSuite
Official Website
19a |
2019.02.19 |
Current
|
15c |
2016.02.18 |
|
Caret
Official Website
5.65 (2012.01.27) |
2013.07.15 |
Current, not folded into the main profile
|
Chronux
Official Website
dcm2nii
Official Website
2013.06.06 |
2014.03.06 |
|
2011.11.11 |
circa 2011 |
Current
|
EEGLAB
Official Website
Release Notes
13.1.1b |
2014.01.29 |
Current
|
12.0.2.5b |
2013.11.14 |
|
11.0.5.4b |
2013.11.14 |
|
12.0.0.0b |
2012.12.10 |
|
11.0.0.0b |
2012.02.21 |
|
10.2.5.8b |
2012.02.21 |
|
FMRIprep
Official Website
1.4.0 |
2019.01.11 |
|
1.3.2 |
2019.01.11 |
|
FreeSurfer
Official Website
Release Notes
6.0.0 |
2017.01.18 |
New
|
5.3.0-HCP |
2013.05.13 |
Current
|
5.3.0 |
2013.05.13 |
|
5.3.0 |
2013.06.18 |
|
5.2.0 |
2013.03.27 |
|
5.1.0 |
2011.11.14 |
|
5.0.0 |
circa 2010 |
|
4.4.0 |
circa 2009 |
|
4.0.5 |
circa 2008 |
|
FSL
Official Website
Revision History
6.0.1 |
2019.03.01 |
New
|
6.0.0 |
2018.10.23 |
|
5.0.11 |
2018.03.19 |
|
5.0.10 |
2017.04.24 |
* Known Issue
|
5.0.9 |
2015.10.02 |
Current
|
5.0.8 |
2014.12.03 |
|
5.0.7 |
2013.10.17 |
|
5.0.6 |
2013.12.18 |
(2013.12.18-2014.10.10)
|
5.0.5 |
2013.10.17 |
(2013.10.17-2013.12.17)
|
5.0.4 |
2013.06.18 |
|
5.0.2 |
2013.02.19 |
|
5.0.1 |
2012.10.01 |
|
5.0.0 |
2012.09.14 |
|
4.1.9 |
2011.12.01 |
|
4.1.8 |
circa 2011.06 |
|
4.1.7 |
circa 2011.11 |
|
4.1.4 |
circa 2009 |
|
4.1.3 |
circa 2009 |
|
4.1.1 |
circa 2008 |
|
4.1.0 |
circa 2008 |
|
4.0.4 |
circa 2008 |
|
Known issue: 5.0.10 fsleyes crash on x2go
HCP Benchwork
Official Website
1.3.2 |
2019.05.22 |
New
|
1.2.3 |
2018.02.13 |
Current
|
1.1.1 |
2016.02.18 |
|
ITKGray
Official Website
080803 |
2009.11.19 |
Current
|
080128 |
2009.11.13 |
|
MRIQC
Official Website
v0.15.1 |
2019.09.05 |
Current
|
SPM
Official Website
SPM8 |
5236 |
2014.01 |
Current
|
SPM5 |
Unknown |
N/A |
No longer supported
|
TrackVis/Diffusion Toolkit
Official Website 1
Official Website 2
TrackVis |
0.5.2.2 |
2014.03.06 |
|
Diffusion Toolkit |
0.6.2.2 |
204.03.06 |
|
WEKA
Official Website
3.7.10 |
2014.03.03 |
Current
|
3.6.5 |
circa 2011.08 |
|