Hoffman2:Software Tools: Difference between revisions
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[[Hoffman2|Back to all things Hoffman2]] | [[Hoffman2|Back to all things Hoffman2]] | ||
There is a CCN usergroup on Hoffman2 which is maintained for groups doing Neuroimaging work at UCLA. Tools like FSL, FreeSurfer, AFNI and Nibabel are maintained for this group separate from normal Hoffman2 programs. In order to take advantage of these tools, you need to | There is a CCN usergroup on Hoffman2 which is maintained for groups doing Neuroimaging work at UCLA. Tools like FSL, FreeSurfer, AFNI and Nibabel are maintained for this group separate from normal Hoffman2 programs. In order to take advantage of these tools, you need to load the modules into the interactive mode or listed in your batch mode scripts. | ||
module load appname/version | |||
Below is a list of the available software tools. We will do our best to update it as changes are made. | Below is a list of the available software tools. We will do our best to update it as changes are made. |
Revision as of 21:28, 25 June 2019
There is a CCN usergroup on Hoffman2 which is maintained for groups doing Neuroimaging work at UCLA. Tools like FSL, FreeSurfer, AFNI and Nibabel are maintained for this group separate from normal Hoffman2 programs. In order to take advantage of these tools, you need to load the modules into the interactive mode or listed in your batch mode scripts.
module load appname/version
Below is a list of the available software tools. We will do our best to update it as changes are made.
AFNI
Version | Install Date | Notes |
---|---|---|
19.0.15 | 2019.02.20 | New |
2017.08.09-17.2.07 | 2017.2.07 | Current |
2016.10.18-16.3.11 | 2016.11.20 | |
2011.12.21.1014 | 2012-03-19 |
ANTS
Version | Install Date | Notes |
---|---|---|
ants-2.2.0 | 2019.03.25 | New |
ants-2.1.0-redhat | 2015.01.23 | Current |
ASHS
Version | Install Date | Notes |
---|---|---|
20180720 | 2018.07.20 | |
2017-02 | 2017.06.08 | |
Rev-103 | 2016.02.24 | Current |
BrainSuite
Version Number | Install Date | Notes |
---|---|---|
19a | 2019.02.19 | Current |
15c | 2016.02.18 |
Caret
Version | Install Date | Notes |
---|---|---|
5.65 (2012.01.27) | 2013.07.15 | Current, not folded into the main profile |
Chronux
Version | Install Date | Notes |
---|---|---|
2.10 | 2013.02.26 | Current |
dcm2nii
Version | Install Date | Notes |
---|---|---|
2013.06.06 | 2014.03.06 | |
2011.11.11 | circa 2011 | Current |
EEGLAB
Version | Install Date | Notes |
---|---|---|
13.1.1b | 2014.01.29 | Current |
12.0.2.5b | 2013.11.14 | |
11.0.5.4b | 2013.11.14 | |
12.0.0.0b | 2012.12.10 | |
11.0.0.0b | 2012.02.21 | |
10.2.5.8b | 2012.02.21 |
FreeSurfer
Version | Install Date | Notes |
---|---|---|
6.0.0 | 2017.01.18 | New |
5.3.0-HCP | 2013.05.13 | Current |
5.3.0 | 2013.05.13 | |
5.3.0 | 2013.06.18 | |
5.2.0 | 2013.03.27 | |
5.1.0 | 2011.11.14 | |
5.0.0 | circa 2010 | |
4.4.0 | circa 2009 | |
4.0.5 | circa 2008 |
FSL
Version Number | Install Date | Notes |
---|---|---|
6.0.1 | 2019.03.01 | New |
6.0.0 | 2018.10.23 | |
5.0.11 | 2018.03.19 | |
5.0.10 | 2017.04.24 | * Known Issue |
5.0.9 | 2015.10.02 | Current |
5.0.8 | 2014.12.03 | |
5.0.7 | 2013.10.17 | |
5.0.6 | 2013.12.18 | (2013.12.18-2014.10.10) |
5.0.5 | 2013.10.17 | (2013.10.17-2013.12.17) |
5.0.4 | 2013.06.18 | |
5.0.2 | 2013.02.19 | |
5.0.1 | 2012.10.01 | |
5.0.0 | 2012.09.14 | |
4.1.9 | 2011.12.01 | |
4.1.8 | circa 2011.06 | |
4.1.7 | circa 2011.11 | |
4.1.4 | circa 2009 | |
4.1.3 | circa 2009 | |
4.1.1 | circa 2008 | |
4.1.0 | circa 2008 | |
4.0.4 | circa 2008 |
Known issue: 5.0.10 fsleyes crash on x2go
HCP Benchwork
- Note: module name: hcp
Version | Install Date | Notes |
---|---|---|
1.3.2 | 2019.05.22 | New |
1.2.3 | 2018.02.13 | Current |
1.1.1 | 2016.02.18 |
ITKGray
Version Number | Install Date | Notes |
---|---|---|
080803 | 2009.11.19 | Current |
080128 | 2009.11.13 |
SPM
Version | Last Patch Applied | Last Checked Date | Notes |
---|---|---|---|
SPM8 | 5236 | 2014.01 | Current |
SPM5 | Unknown | N/A | No longer supported |
TrackVis/Diffusion Toolkit
Tool | Version Number | Last Checked Date | Notes |
---|---|---|---|
TrackVis | 0.5.2.2 | 2014.03.06 | |
Diffusion Toolkit | 0.6.2.2 | 204.03.06 |
WEKA
Version Number | Install Date | Notes |
---|---|---|
3.7.10 | 2014.03.03 | Current |
3.6.5 | circa 2011.08 |