Hoffman2:Software Tools: Difference between revisions
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[[Hoffman2|Back to all things Hoffman2]] | [[Hoffman2|Back to all things Hoffman2]] | ||
==Setting Up Your Account to Access the Tools== | |||
: '''NOTE: If you've never used a *NIX text editor, please read a bit about some of them [[Text Editors|here]] before proceeding.''' | |||
In order to access all the great software packages that have been installed on Hoffman2 for the FMRI usergroup (list below), you need to edit your Bash Profile on the cluster. Follow these easy steps: | In order to access all the great software packages that have been installed on Hoffman2 for the FMRI usergroup (list below), you need to edit your Bash Profile on the cluster. Follow these easy steps: | ||
# [[Hoffman2:Accessing the Cluster#SSH - Command Line|SSH into Hoffman2]] and make sure you are in your home directory (type the command <code>cd</code> and press enter). | # [[Hoffman2:Accessing the Cluster#SSH - Command Line|SSH into Hoffman2]] and make sure you are in your home directory (type the command <code>cd</code> and press enter). | ||
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#:: CTRL+c</code> | #:: CTRL+c</code> | ||
# Logout of Hoffman2. The next time you log in, extra login messages will appear and you will have access to the FMRI usergroup software packages. | # Logout of Hoffman2. The next time you log in, extra login messages will appear and you will have access to the FMRI usergroup software packages. | ||
==List of Tools== | |||
Under Construction... | |||
===GCC=== | |||
===LAPACK=== | |||
===BLAS=== | |||
===GLIB=== | |||
===C++=== | |||
===CMake=== | |||
===CPACK=== | |||
=== | |||
===Python2.7=== | |||
====Packages==== | |||
=====CVXOPT===== | |||
=====Cython===== | |||
=====Gnuplot===== | |||
=====IPython===== | |||
=====matplotlib===== | |||
=====nibabel===== | |||
=====nifti===== | |||
=====nipype===== | |||
=====nose===== | |||
=====numpy===== | |||
=====pydicom===== | |||
=====pygments===== | |||
=====pypr===== | |||
=====PyQt4===== | |||
=====pytz===== | |||
=====pywt===== | |||
=====pyximport===== | |||
=====scikits===== | |||
=====scipy===== | |||
=====sklearn===== | |||
=====sphinx===== | |||
=====sympy===== | |||
=====traits===== | |||
=====virtualenv===== | |||
=====xcbgen===== |
Revision as of 00:06, 14 March 2012
Setting Up Your Account to Access the Tools
- NOTE: If you've never used a *NIX text editor, please read a bit about some of them here before proceeding.
In order to access all the great software packages that have been installed on Hoffman2 for the FMRI usergroup (list below), you need to edit your Bash Profile on the cluster. Follow these easy steps:
- SSH into Hoffman2 and make sure you are in your home directory (type the command
cd
and press enter). - Open the file .bash_profile for editing. With VIM you would type
- Paste in the lines
source /u/home/FMRI/apps/etc/profile
umask 007
- Save and close out the file
- Logout of Hoffman2. The next time you log in, extra login messages will appear and you will have access to the FMRI usergroup software packages.
List of Tools
Under Construction...