Hoffman2:Software Tools: Difference between revisions

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(Created page with ": '''NOTE: If you've never used a *NIX text editor, please read a bit about some of them here before proceeding.''' [Hoffman2|Back to all things Hoffman2]] In o...")
 
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: '''NOTE: If you've never used a *NIX text editor, please read a bit about some of them [[Text Editors|here]] before proceeding.'''
: '''NOTE: If you've never used a *NIX text editor, please read a bit about some of them [[Text Editors|here]] before proceeding.'''
[Hoffman2|Back to all things Hoffman2]]
[[Hoffman2|Back to all things Hoffman2]]


In order to access all the great software packages that have been installed on Hoffman2 for the FMRI usergroup (list below), you need to edit your Bash Profile on the cluster.  Follow these easy steps:
In order to access all the great software packages that have been installed on Hoffman2 for the FMRI usergroup (list below), you need to edit your Bash Profile on the cluster.  Follow these easy steps:
# [[Hoffman2:Accessing the Cluster#SSH|SSH into Hoffman2]] and make sure you are in your home directory (type the command <code>cd</code> and press enter).
# [[Hoffman2:Accessing the Cluster#SSH - Command Line|SSH into Hoffman2]] and make sure you are in your home directory (type the command <code>cd</code> and press enter).
# Open the file '''.bash_profile''' for editing.  With [[Text Editors#Vim|VIM]] you would type
# Open the file '''.bash_profile''' for editing.  With [[Text Editors#Vim|VIM]] you would type
#: With [[Text Editors#Vim|VIM]] you would type
#: With [[Text Editors#Vim|VIM]] you would type

Revision as of 23:58, 13 March 2012

NOTE: If you've never used a *NIX text editor, please read a bit about some of them here before proceeding.

Back to all things Hoffman2

In order to access all the great software packages that have been installed on Hoffman2 for the FMRI usergroup (list below), you need to edit your Bash Profile on the cluster. Follow these easy steps:

  1. SSH into Hoffman2 and make sure you are in your home directory (type the command cd and press enter).
  2. Open the file .bash_profile for editing. With VIM you would type
    With VIM you would type
    vim .bash_profile
    With Emacs you would type
    emacs .bash_profile
  3. Paste in the lines
    source /u/home/FMRI/apps/etc/profile
    umask 007
  4. Save and close out the file
    With VIM you would type
    ESC
    :wq
    ENTER
    With Emacs you would type
    CTRL+x
    CTRL+c
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