Hoffman2:R:ggsegs: Difference between revisions
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(Created page with " ==From a Hoffman2 node== module R/4.2.2 anaconda3/2022.05 freesurfer/7.3.2 proj/7.1.1 gdal/3.1.3 export PATH=$PATH:/u/project/CCN/apps/conda/rh7/R4.2.2_ggseg:/u/project/CC...") |
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==From a Hoffman2 node== | ==From a Hoffman2 node== | ||
module R/4.2.2 anaconda3/2022.05 freesurfer/7.3.2 proj/7.1.1 gdal/3.1.3 | Load the required modules: | ||
<pre> | |||
module load R/4.2.2 | |||
module load anaconda3/2022.05 | |||
module load freesurfer/7.3.2 | |||
module load proj/7.1.1 | |||
module load gdal/3.1.3</pre> | |||
export PATH=$PATH:/u/project/CCN/apps/conda/rh7/R4.2.2_ggseg:/u/project/CCN/apps/R_libs/rh7/4.2.2_ggseg | Add the path | ||
<pre>export PATH=$PATH:/u/project/CCN/apps/conda/rh7/R4.2.2_ggseg:/u/project/CCN/apps/R_libs/rh7/4.2.2_ggseg</pre> | |||
conda activate /u/project/CCN/apps/conda/rh7/R4.2.2_ggseg | Activate the conda environment: | ||
<pre>conda activate /u/project/CCN/apps/conda/rh7/R4.2.2_ggseg</pre> | |||
Launch R | Launch R with the command "R" and enter the following: | ||
<pre>.libPaths("/u/project/CCN/apps/R_libs/rh7/4.2.2_ggseg")</pre> | |||
Load the library in R | |||
<pre>library(ggsegExtra)</pre> | |||
library(ggsegExtra) | |||
Latest revision as of 00:54, 10 March 2023
From a Hoffman2 node
Load the required modules:
module load R/4.2.2 module load anaconda3/2022.05 module load freesurfer/7.3.2 module load proj/7.1.1 module load gdal/3.1.3
Add the path
export PATH=$PATH:/u/project/CCN/apps/conda/rh7/R4.2.2_ggseg:/u/project/CCN/apps/R_libs/rh7/4.2.2_ggseg
Activate the conda environment:
conda activate /u/project/CCN/apps/conda/rh7/R4.2.2_ggseg
Launch R with the command "R" and enter the following:
.libPaths("/u/project/CCN/apps/R_libs/rh7/4.2.2_ggseg")
Load the library in R
library(ggsegExtra)