Hoffman2:Modules: Difference between revisions
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[[Hoffman2|Back to all things Hoffman2]] | [[Hoffman2|Back to all things Hoffman2]] | ||
[Environmental modules https://www.hoffman2.idre.ucla.edu/computing/modules/] is a utility that allows users to dynamically modify their shell environment (e.g., $PATH, $LD_LIBRARY_PATH, etc.) in order to support a number of applications installed on the Hoffman2 Cluster. CCN supports several modules on Hoffman2 including, AFNI, ANTs, Caret, FreeSurfer, FSL, ITKGray, ITK-SNAP, and MRIcron | |||
# [[Hoffman2:Accessing the Cluster#SSH - Command Line|SSH into Hoffman2]] | # [[Hoffman2:Accessing the Cluster#SSH - Command Line|SSH into Hoffman2]] | ||
# Use your favorite [[Text Editors|text editor]] to edit the file <code>~/.bash_profile</code> | # Use your favorite [[Text Editors|text editor]] to edit the file <code>~/.bash_profile</code> | ||
== | ==vi== | ||
#:* <pre>$ | #:* <pre>$ vim ~/.bash_profile</pre> | ||
# Insert these lines at the '''bottom''' of the file | # Insert these lines at the '''bottom''' of the file | ||
#:* Type <code>G</code> - (capital G) to go to the end of the file | |||
#:* Type <code>A</code> - (capital A) to go to the end of the line and enter insert mode | |||
#:* Type <code>ENTER</code> - to insert a newline | |||
#:* Type or paste in the lines below. | |||
#:* <pre>module use /u/project/CCN/apps/modulefiles umask 007</pre> | #:* <pre>module use /u/project/CCN/apps/modulefiles umask 007</pre> | ||
# Save the file by typing | # Save the file by typing | ||
#:* <code> | #:* <code>ESC + ":wq" + ENTER</code> | ||
# Log out of Hoffman2 and the next time you log in, everything will be set for you to start working. | # Log out of Hoffman2 and the next time you log in, everything will be set for you to start working. | ||
Revision as of 18:19, 17 April 2017
[Environmental modules https://www.hoffman2.idre.ucla.edu/computing/modules/] is a utility that allows users to dynamically modify their shell environment (e.g., $PATH, $LD_LIBRARY_PATH, etc.) in order to support a number of applications installed on the Hoffman2 Cluster. CCN supports several modules on Hoffman2 including, AFNI, ANTs, Caret, FreeSurfer, FSL, ITKGray, ITK-SNAP, and MRIcron
- SSH into Hoffman2
- Use your favorite text editor to edit the file
~/.bash_profile
vi
$ vim ~/.bash_profile
- Insert these lines at the bottom of the file
- Type
G- (capital G) to go to the end of the file - Type
A- (capital A) to go to the end of the line and enter insert mode - Type
ENTER- to insert a newline - Type or paste in the lines below.
module use /u/project/CCN/apps/modulefiles umask 007
- Type
- Save the file by typing
ESC + ":wq" + ENTER
- Log out of Hoffman2 and the next time you log in, everything will be set for you to start working.