Difference between revisions of "BIDs configuration file"

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(BIDs configuration file)
(BIDs configuration file)
Line 19: Line 19:
 
====Example:====
 
====Example:====
  
  gre_fieldmap_5 sub-SUBJ_fmap_mag
+
  gre_fieldmap_5 sub-'''SUBJ'''_fmap_mag
  gre_fieldmap_6 sub-SUBJ_fmap_phase
+
  gre_fieldmap_6 sub-'''SUBJ'''_fmap_phase
  MPRAGE_15 sub-SUBJ_mprage
+
  MPRAGE_15 sub-'''SUBJ'''_mprage
  Task_Block_1_9 sub-SUBJ_task1
+
  Task_Block_1_9 sub-'''SUBJ'''_task1
  Task_Block_2_10 sub-SUBJ_task2
+
  Task_Block_2_10 sub-'''SUBJ'''_task2
  
 
  MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-120_T1w
 
  MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-120_T1w

Revision as of 18:27, 28 October 2019

BIDs configuration file

BIDs configuration file is used to specify the naming convention for your data file in Hoffman2:Scripts:setup_subject_3.

This file should have the following format for all files you want to be converted to BIDs style names.

Original_File_Name sub-SUBJ_Name
Original_File_Name sub-SUBJ_Name
Original_File_Name sub-SUBJ_Name
...

The Original_File_Name and the sub-SUBJ_Name are separated by a space.

SUBJ will be converted automatically to the subject ID which specified when you run the setup_subject_3 script. (So "sub-SUBJ" will be "sub-1234" in case the subject ID is "1234" as the result file name)

The "Name" part in "sub-SUBJ_Name" should be replace by the text you want to use following the BIDs format rules.

Example:

gre_fieldmap_5 sub-SUBJ_fmap_mag
gre_fieldmap_6 sub-SUBJ_fmap_phase
MPRAGE_15 sub-SUBJ_mprage
Task_Block_1_9 sub-SUBJ_task1
Task_Block_2_10 sub-SUBJ_task2
MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-120_T1w
MPRAGE_6.4_min__0.8X0.8X0.8mm_7 sub-120_T1w_rec-uncorrected