BIDs configuration file

From Center for Cognitive Neuroscience
Jump to: navigation, search

BIDs configuration file

BIDs configuration file is used to specify the naming convention for your data file in Hoffman2:Scripts:setup_subject_3.

This file should have the following format for all files you want to be converted to BIDs style names.

original_File_Name sub-SUBJ_Name
original_File_Name sub-SUBJ_Name
original_File_Name sub-SUBJ_Name
...

The original_File_Name and the sub-SUBJ_Name are separated by a space.

SUBJ will be converted automatically to the subject ID (For example, for subject ID "1234", "sub-SUBJ" will be changed to "sub-1234" )

The "Name" in "sub-SUBJ_Name" should be replace by the string following the BIDs format rules.

Example:

gre_fieldmap_5 sub-SUBJ_fmap_magnitude
gre_fieldmap_6 sub-SUBJ_fmap_phasediff
Task_Block_1_9 sub-SUBJ_task-rest_bold
MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-SUBJ_T1w