Difference between revisions of "BIDs configuration file"

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(BIDs configuration file)
(BIDs configuration file)
Line 5: Line 5:
 
This file should have the following format for all files you want to be converted to BIDs style names.
 
This file should have the following format for all files you want to be converted to BIDs style names.
  
  Original_File_Name sub-SUBJ_Name
+
  Original_File_Name sub-'''SUBJ'''_Name
  Original_File_Name sub-SUBJ_Name
+
  Original_File_Name sub-'''SUBJ'''_Name
  Original_File_Name sub-SUBJ_Name
+
  Original_File_Name sub-'''SUBJ'''_Name
 
  ...
 
  ...
  

Revision as of 18:26, 28 October 2019

BIDs configuration file

BIDs configuration file is used to specify the naming convention for your data file in Hoffman2:Scripts:setup_subject_3.

This file should have the following format for all files you want to be converted to BIDs style names.

Original_File_Name sub-SUBJ_Name
Original_File_Name sub-SUBJ_Name
Original_File_Name sub-SUBJ_Name
...

The Original_File_Name and the sub-SUBJ_Name are separated by a space.

SUBJ will be converted automatically to the subject ID which specified when you run the setup_subject_3 script. (So "sub-SUBJ" will be "sub-1234" in case the subject ID is "1234" as the result file name)

The "Name" part in "sub-SUBJ_Name" should be replace by the text you want to use following the BIDs format rules.

Example:

gre_fieldmap_5 sub-SUBJ_fmap_mag
gre_fieldmap_6 sub-SUBJ_fmap_phase
MPRAGE_15 sub-SUBJ_mprage
Task_Block_1_9 sub-SUBJ_task1
Task_Block_2_10 sub-SUBJ_task2
MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-120_T1w
MPRAGE_6.4_min__0.8X0.8X0.8mm_7 sub-120_T1w_rec-uncorrected