Hoffman2:Software Tools:FMRIprep

FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data

Official Website

Fmriprep Command Line Usage

FMRIprep is provided through Apptainer

module load apptainer
apptainer run --cleanenv /u/project/CCN/apps/fmriprep/rh7/25.1.3/fmriprep-25.1.3.sif \
-w path/to/workspace \
--fs-license-file /u/project/CCN/apps/freesurfer/rh7/7.2.0/.license \
path/to/data/dir path/to/output/dir \
participant --participant-label label