Back to all things Hoffman2
There is a CCN usergroup on Hoffman2 which is maintained for groups doing Neuroimaging work at UCLA. Tools like FSL, FreeSurfer, AFNI and Nibabel are maintained for this group separate from normal Hoffman2 programs. In order to take advantage of these tools, you need to setup your bash profile properly.
Below is a list of the available software tools. We will do our best to update it as changes are made.
AFNI
Official Webste
| 19.0.15 |
2019.02.20 |
|
| 2017.08.09-17.2.07 |
2017.2.07 |
Current
|
| 2016.10.18-16.3.11 |
2016.11.20 |
|
| 2011.12.21.1014 |
2012-03-19 |
|
ANTS
Official Website
| ants-2.2.0 |
2019.03.25 |
|
| ants-2.1.0-redhat |
2015.01.23 |
|
BrainSuite
Official Website
| 19a |
2019.02.19 |
Current
|
| 15c |
2016.02.18 |
|
Caret
Official Website
| 5.65 (2012.01.27) |
2013.07.15 |
Current, not folded into the main profile
|
Chronux
Official Website
dcm2nii
Official Website
| 2013.06.06 |
2014.03.06 |
|
| 2011.11.11 |
circa 2011 |
Current
|
EEGLAB
Official Website
Release Notes
| 13.1.1b |
2014.01.29 |
Current
|
| 12.0.2.5b |
2013.11.14 |
|
| 11.0.5.4b |
2013.11.14 |
|
| 12.0.0.0b |
2012.12.10 |
|
| 11.0.0.0b |
2012.02.21 |
|
| 10.2.5.8b |
2012.02.21 |
|
FreeSurfer
Official Website
Release Notes
| 6.0.0 |
2017.01.18 |
|
| 5.3.0-HCP |
2013.05.13 |
Current
|
| 5.3.0 |
2013.05.13 |
|
| 5.3.0 |
2013.06.18 |
|
| 5.2.0 |
2013.03.27 |
|
| 5.1.0 |
2011.11.14 |
|
| 5.0.0 |
circa 2010 |
|
| 4.4.0 |
circa 2009 |
|
| 4.0.5 |
circa 2008 |
|
FSL
Official Website
Revision History
| 6.0.1 |
2019.03.01 |
|
| 6.0.0 |
2018.10.23 |
|
| 5.0.11 |
2018.03.19 |
|
| 5.0.10 |
2017.04.24 |
* Known Issue
|
| 5.0.9 |
2015.10.02 |
Current
|
| 5.0.8 |
2014.12.03 |
|
| 5.0.7 |
2013.10.17 |
|
| 5.0.6 |
2013.12.18 |
(2013.12.18-2014.10.10)
|
| 5.0.5 |
2013.10.17 |
(2013.10.17-2013.12.17)
|
| 5.0.4 |
2013.06.18 |
|
| 5.0.2 |
2013.02.19 |
|
| 5.0.1 |
2012.10.01 |
|
| 5.0.0 |
2012.09.14 |
|
| 4.1.9 |
2011.12.01 |
|
| 4.1.8 |
circa 2011.06 |
|
| 4.1.7 |
circa 2011.11 |
|
| 4.1.4 |
circa 2009 |
|
| 4.1.3 |
circa 2009 |
|
| 4.1.1 |
circa 2008 |
|
| 4.1.0 |
circa 2008 |
|
| 4.0.4 |
circa 2008 |
|
Known issue: 5.0.10 fsleyes crash on x2go
ITKGray
Official Website
| 080803 |
2009.11.19 |
Current
|
| 080128 |
2009.11.13 |
|
SPM
Official Website
| SPM8 |
5236 |
2014.01 |
Current
|
| SPM5 |
Unknown |
N/A |
No longer supported
|
TrackVis/Diffusion Toolkit
Official Website 1
Official Website 2
| TrackVis |
0.5.2.2 |
2014.03.06 |
|
| Diffusion Toolkit |
0.6.2.2 |
204.03.06 |
|
WEKA
Official Website
| 3.7.10 |
2014.03.03 |
Current
|
| 3.6.5 |
circa 2011.08 |
|