Hoffman2:Software Tools:FMRIprep: Difference between revisions
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module load apptainer | module load apptainer | ||
apptainer run --cleanenv /u/project/CCN/apps/fmriprep/rh7/25.1.3/fmriprep-25.1.3.sif \ | apptainer run --cleanenv /u/project/CCN/apps/fmriprep/rh7/25.1.3/fmriprep-25.1.3.sif \ | ||
-w path/to/workspace | -w path/to/workspace \ | ||
--participant_label sub-xxxx \ | --participant_label sub-xxxx \ | ||
--fs-license-file /u/project/CCN/apps/freesurfer/rh7/7.2.0/.license \ | --fs-license-file /u/project/CCN/apps/freesurfer/rh7/7.2.0/.license \ | ||
Revision as of 18:15, 8 April 2026
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
FMRIprep is provided through Apptainer
module load apptainer apptainer run --cleanenv /u/project/CCN/apps/fmriprep/rh7/25.1.3/fmriprep-25.1.3.sif \ -w path/to/workspace \ --participant_label sub-xxxx \ --fs-license-file /u/project/CCN/apps/freesurfer/rh7/7.2.0/.license \ path/to/data/dir path/to/output/dir \ participant --participant-label label