Hoffman2:Submit jobarray

Back to all things Hoffman2

#!/bin/bash
#$ -cwd
# error = Merged with joblog
#$ -o joblog.$JOB_ID.$TASK_ID
#$ -j y
#$ -pe shared 2
#$ -l h_rt=8:00:00,h_data=4G
# Email address to notify
#$ -M $USER@mail
# Notify when
#$ -m a
#  Job array indexes
#$ -t 1-5:1

# Load the job environment:
. /u/local/Modules/default/init/modules.sh
module use /u/project/CCN/apps/modulefiles

# Load the FSL module
module load fsl

# This is optional
# More info here: https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:FSL 
export NO_FSL_JOBS=true

# Set up the subjects list
declare -a subjects

subjects[1]="su3v3hkaykw2"
subjects[2]="wxg5mk5u5xbz"
subjects[3]="6q2bgkqu5grp"
subjects[4]="whjue68jmwyh"
subjects[5]="pfx3ju9wz8rr"

echo "This is sub-job $SGE_TASK_ID"
echo "This is subject ${subjects[$SGE_TASK_ID]}"

# Your script content goes here...