Neuroimaging+ Journal Club

About the Group

During the Spring 2014 quarter we are meeting every other Thursday from 1-2pm in Gonda 2303. Many topics are welcomed including, but not limited to, neuroimaging methods, connectivity, genetics, cognitive neuroscience, neurological diseases/disorders, and new statistical approaches. Participants are welcome to present published papers or results from their own on-going research.

Spring 2014 Meeting Dates: April 10th, April 24th, May 8th, May 22nd and May 29th

Please contact Tessa Harrison with any questions: tessaharrison[at]ucla[dot]edu .

Spring 2014 Meeting Topics

• 4/10: Nicco Reggente (Rissman Lab)
  

A Common Cortical Metric for Spatial, Temporal, and Social Distance.
Parkinson, C, Liu, S and Wheatley, T
http://www.jneurosci.org/content/34/5/1979.full.pdf+html

• 4/24: Katherine Lawrence (Rotating in Feusner Lab) and Rachel Jonas (Bearden Lab)
  

Affection Modulation of Cognitive Control is Determined by Performance-Contingency and Mediated by Ventromedial Prefrontal and Cingulate Cortex.
Braem, S, King, JA, Korb, FM, Krebs, RM, Notebaert,W, Egner, T.
http://www.jneurosci.org/content/33/43/16961.full.pdf+html

• 5/8: Janelle Liu (Rotating in White Lab), Leanna Hernandez (Dapretto Lab) and Wesley Kerr (Cohen Lab)
  

Memory Consolidation by Replay of Stimulus-Specific Neural Activity
Deuker, L, Ollings, J, Fell, J, Kranz, TA, Mormann, F, Montag, C, Reuter, M, Elger, CE, Axmacher, N
http://www.jneurosci.org/content/33/49/19373.full.pdf+html

• 5/22: David DiTullio (Carmichael Lab) and Tessa Harrison (Bookheimer Lab)
  

Extent of Bilateral Neuronal Network Reorganization and Functional Recovery in Relation to Stroke Severity
van Meer, MPA, Otte, WM, van der Marel, K, Nijboer, CH, Kavelaars, A, van der Sprenkel, JWB, Viergever, MA, Dijkhuizen, RM
http://www.jneurosci.org/content/32/13/4495.full.pdf+html

• 5/29: Don Vaughn (Rotating in Cohen Lab) and Wei Li (Feusner Lab)
  

Past Quarters

Fall 2012

• 11/20: Agatha

High-Resolution fMRI Reveals Laminar Differences in Neurovascular Coupling between Positive and Negative BOLD Responses
Jozien Goense, Hellmut Merkle, and Nikos K. Logothetis
Neuron 76, 629–639, November 8, 2012.
http://dx.doi.org/10.1016/j.neuron.2012.09.019

• 11/6: Leo

Disentangling motor execution from motor imagery with the phantom limb
Estelle Raffin, Jérémie Mattout, Karen T. Reilly, Pascal Giraux
http://brain.oxfordjournals.org/content/135/2/582.long
AND a very short case study
The appearance of new phantom fingers postamputation in a phocomelus
Paul D. McGeoch & V. S. Ramachandran
http://dx.doi.org/10.1080/13554794.2011.556128

• 10/23: Pam

Spectral Fingerprints of Large-Scale Neuronal Interactions
Markus Siegel, Tobias H. Donner & Andreas K. Engel
Nature Reviews Neuroscience 13, 121-134 (February 2012)
http://www.nature.com/nrn/journal/v13/n2/full/nrn3137.html
AND
Large-scale cortical correlation structure of spontaneous oscillatory activity
Joerg F Hipp, David J Hawellek, Maurizio Corbetta, Markus Siegel & Andreas K Engel
Nature Neuroscience 15, 884–890 (2012)
http://www.nature.com/neuro/journal/v15/n6/full/nn.3101.html

• 10/9: Tessa

The Geometric Structure of the Brain Fiber Pathways
Van J. Wedeen, Douglas L. Rosene, Ruopeng Wang, Guangping Dai, Farzad Mortazavi, Patric Hagmann, Jon H. Kaas, Wen-Yih I. Tseng
http://www.sciencemag.org/content/335/6076/1628.full

And the new criticism + response in Science:
Comment on “The Geometric Structure of the Brain Fiber Pathways”
Marco Catani, Istvan Bodi, Flavio Dell’Acqua
http://www.sciencemag.org/content/337/6102/1605.4.full

Response to Comment on “The Geometric Structure of the Brain Fiber Pathways”
Van J. Wedeen, Douglas L. Rosene, Ruopeng Wang, Guangping Dai, Farzad Mortazavi, Patric Hagmann, Jon H. Kaas, Wen-Yih I. Tseng
http://www.sciencemag.org/content/337/6102/1605.5.full

• 9/11: Nicco

Tracking cognitive fluctuations with multivoxel pattern time course (MVPTC) analysis
Chiu YC, Esterman MS, Gmeindl L, Yantis S.
Neuropsychologia. 2012 Mar;50(4):479-86. Epub 2011 Jul 19.

Winter 2013

• 1/24: Kevin

Local and long-range functional connectivity is reduced in concert in autism spectrum disorders
Khan S, Gramfort A, Shetty NR, Kitzbichler MG, Ganesan S, Moran JM, Lee SM, Gabrieli JD, Tager-Flusberg HB, Joseph RM, Herbert MR, Hämäläinen MS, Kenet T.
PNAS 2013 http://www.pnas.org/content/early/2013/01/09/1214533110.long

• 2/7: Mahsa

Measuring phase-amplitude coupling between neuronal oscillations of different frequencies
Tort AB, Komorowski R, Eichenbaum H, Kopell N
J Neurophysiol. 2010 http://jn.physiology.org/content/104/2/1195.long

• 2/21: Agatha

EEG correlates of time-varying BOLD functional connectivity
Chang C, Liu Z, Chen MC, Liu X, Duyn JH
NeuroImage. 2013 http://www.sciencedirect.com/science/article/pii/S1053811913000967

• 3/14: Pam

The spatiospectral characterization of brain networks: Fusing concurrent EEG spectra and fMRI maps
Bridwell D, Wu L, Eichele T, Calhoun V
http://www.sciencedirect.com/science/article/pii/S1053811912012098

• 3/21: Sam

State-dependent differences between functional and effective connectivity of the human cortical motor system
Rehme AK, Eickhoff SB, Grefkes C
http://www.sciencedirect.com/science/article/pii/S1053811912011391

Spring 2013

• 4/11: Jeiran Choupan (visiting student from the Centre for Advanced Imaging & Queensland Brain Institute)
  

Brain Decoding using Natural Stimulus fMRI

• 4/25: Wei Li (Feusner Lab)
  

A Hierarchy of Temporal Receptive Windows in Human Cortex
Uri Hasson, Eunice Yang, Ignacio Vallines, David J. Heeger, Nava Rubin
http://www.jneurosci.org/content/28/10/2539.full.pdf+html

• 5/9: Matt Anderson (Basso Lab)
  

Direct Injection of Noise to the Visual Cortex Decreases Accuracy but Increases Decision Confidence
Dobromir A. Rahev, Brian Maniscalco, Bruce Luber, Hakwan Lau, Sarah H Lisanby
http://jn.physiology.org/content/107/6/1556.full.pdf+html

• 5/23: Leo Moore (Iacoboni Lab)
  

Empathy and Prosocial Behavior

• 6/6: Nicco Reggente (Rissman Lab)
  

Decoding Unattended Fearful Faces with Whole-Brain Correlations: An Approach to Identify Condition-Dependent Large-Scale Functional Connectivity
Spiro P. Pantazatos, Ardesheer Talati, Paul Oavlidis, Joy Hirsch
http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002441

Fall 2013

• 10/10: Tessa Harrison (Bookheimer Lab)
  

Developmental Changes in Organization of Structural Brain Networks
BS Khundrakpam, A Reid, J Brauer, F Carbonell, J Lewis, S Ameis, S Karama, J Lee, Z Chen, S Das and AC Evans
http://cercor.oxfordjournals.org/content/early/2012/07/10/cercor.bhs187.full.pdf+html

• 10/24: Diane Goldenberg (Galvan and Fuligni Labs)
  

Talk title:
Assessing risk and reward in the scanner: the challenge of ecological validity
Accompanying Article:
Peers increase adolescent risk taking by enhancing activity in the brain's reward circuitry
J Chein, D Albert, L O'Brien, K Uckert and L Steinberg
http://onlinelibrary.wiley.com/doi/10.1111/j.1467-7687.2010.01035.x/pdf

• 11/07: Wesley Kerr (Cohen Lab)
  

Automated MR image classification in temporal lobe epilepsy
NK Focke, M Yogarajah, MR Symms, O Gruber, W Paulus and JS Duncan
http://www.sciencedirect.com/science/article/pii/S1053811911008639

• 11/21: Rachel Jonas (Bearden Lab)
  

Neuroanatomical phenotypes in a mouse model of the 22q11.2 microdeletion
J Ellegood, S Markx, JP Lerch, PE Steadman, C Genc, F Provenzano, SA Kushner, RM Henkelman, M Karaiorgou and JA Gogos
http://www.nature.com/mp/journal/vaop/ncurrent/pdf/mp2013112a.pdf

• 12/05: John Coetzee (Monti Lab)
  

Intensive reasoning training alters patterns of brain connectivity at rest
Allyson P. Mackey, Alison T. Miller Singley, and Silvia A. Bunge
http://www.jneurosci.org/content/33/11/4796.full.pdf

Winter 2014

• 1/16: Matt Schreiner (Bearden Lab)
  

Role of local network oscillations in resting-state functional connectivity
J Cabral, E Hugues, O Sporns and G Deco
http://www.sciencedirect.com/science/article/pii/S1053811911003880#

• 1/30: Daya Alexander
  

The contribution of gliosis to diffusion tensor anisotropy and tractography following traumatic brain injury: validation in the rat using Fourier analysis of stained tissue sections
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3155707/pdf/awr161.pdf

• 2/13: John Dell'Italia (Monti Lab)
  

Neural Networks of Colored Sequence Synesthesia
http://www.jneurosci.org/content/33/35/14098.full.pdf+html

• 2/27: Tessa Harrison (Bookheimer Lab)
  

Methods to detect, characterize and remove motion artifact in resting state fMRI
http://www.sciencedirect.com/science/article/pii/S1053811913009117#

• 3/13: Tiffany Chow (Rissman Lab)
  

Neural mechanisms of reactivation-induced updating that enhance and distort memory
http://www.pnas.org/content/early/2013/11/01/1319630110.full.pdf+html

Old

• 10/27: Jesse

Intact Bilateral Resting-State Networks in the Absence of the Corpus Callosum
J. Michael Tyszka, Daniel P. Kennedy, Ralph Adolphs, Lynn K. Paul
http://www.jneurosci.org/content/31/42/15154.full

• 11/10: Jeff

Functional connectivity magnetic resonance imaging classification of autism
Jeffrey S. Anderson, Jared A. Nielsen, Alyson L. Froehlich, Molly B. DuBray, T. Jason Druzgal, Annahir N. Cariello, Jason R. Cooperrider, Brandon A. Zielinski, Caitlin Ravichandran, P. Thomas Fletcher, Andrew L. Alexander, Erin D. Bigler, Nicholas Lange, Janet E. Lainhart
http://brain.oxfordjournals.org/content/early/2011/10/17/brain.awr263.full

• 12/1: Sam

The cortical dynamics of intelligible speech.
Leff AP, Schofield TM, Stephan KE, Crinion JT, Friston KJ, Price CJ.
J Neurosci. 2008 Dec 3;28(49):13209-15.
http://www.ncbi.nlm.nih.gov/pubmed/19052212

• 12/15: Agatha

The amplitude and timing of the BOLD signal reflect the relationship between LFP power at different frequencies
Magri C, Schridde U, Murayama Y, Panzeri S and Logothetis NK (November-2011)
Journal of Neuroscience. in press (will email out the article)

• 1/5: Mark

Perceptual Learning Incepted by Decoded fMRI Neurofeedback Without Stimulus Presentation
Kazuhisa Shibata, Takeo Watanabe, Yuka Sasaki, Mitsuo Kawato
Science 9 December 2011: Vol. 334 no. 6061 pp. 1413-1415
http://www.sciencemag.org/content/334/6061/1413.full

• 1/31: Jesse

Anatomical connectivity patterns predict face selectivity in the fusiform gyrus
Zeynep M Saygin, David E Osher, Kami Koldewyn, Gretchen Reynolds, John D E Gabrieli, Rebecca R Saxe
Nature Neuroscience 2011 advanced online publication.
http://www.nature.com/neuro/journal/vaop/ncurrent/full/nn.3001.html

• 2/14: Jeff

Functional network organization of the human brain.
Power JD, Cohen AL, Nelson SM, Wig GS, Barnes KA, Church JA, Vogel AC, Laumann TO, Miezin FM, Schlaggar BL, Petersen SE.
Neuron. 2011 Nov 17;72(4):665-78.
http://www.sciencedirect.com/science/article/pii/S0896627311007926

• 2/28: Teena

Resting-state networks in awake five- to eight-year old children.
de Bie HM, Boersma M, Adriaanse S, Veltman DJ, Wink AM, Roosendaal SD, Barkhof F, Stam CJ, Oostrom KJ, Delemarre-van de Waal HA, Sanz-Arigita EJ.
Hum Brain Mapp. 2011 Apr 25. doi: 10.1002/hbm.21280.
http://onlinelibrary.wiley.com/doi/10.1002/hbm.21280/abstract;jsessionid=2EBFCCBF7E674D5F2CE607D9DAD50DAC.d01t03

• 3/13: Emily

Genome-wide supported risk variant for bipolar disorder alters anatomical connectivity in the human brain
Julia Linkea, Stephanie H. Wittc, Andrea V. Kinga, Vanessa Nieratschkerc, Cyril Poupond, Achim Gasse, Michael G. Hennericie, Marcella Rietschelc, Michèle Wessa
http://www.sciencedirect.com/science/article/pii/S1053811911012535

• 4/3: Jesse

Temporally-independent functional modes of spontaneous brain activity.
Smith SM, Miller KL, Moeller S, Xu J, Auerbach EJ, Woolrich MW, Beckmann CF, Jenkinson M, Andersson J, Glasser MF, Van Essen DC, Feinberg DA, Yacoub ES, Ugurbil K.
Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3131-6.
http://www.pnas.org/content/109/8/3131.long

• 4/17: Agatha

Differentiating BOLD and non-BOLD signals in fMRI time series using multi-echo EPI
Prantik Kundu, Souheil J. Inati, Jennifer W. Evans, Wen-Ming Luh, Peter A. Bandettini
http://www.sciencedirect.com/science/article/pii/S1053811911014303
Related paper on RETROICOR: http://rsl.stanford.edu/glover/papers/retrocor.pdf
Siemens MRI terminology crib sheet: http://www.medical.siemens.com/siemens/en_US/gg_mr_FBAs/files/MAGNETOM_World/Application_Tips/MRI_Acronyms.pdf

• 5/1: Matt

Test-retest reliability of resting-state connectivity network characteristics using fMRI and graph theoretical measures.
Braun U, Plichta MM, Esslinger C, Sauer C, Haddad L, Grimm O, Mier D, Mohnke S, Heinz A, Erk S, Walter H, Seiferth N, Kirsch P, Meyer-Lindenberg A.
Neuroimage. 2012 Jan 16;59(2):1404-12. Epub 2011 Aug 23.
http://www.ncbi.nlm.nih.gov/pubmed/21888983

• 5/15: Nanthia

Learning in the fast lane: new insights into neuroplasticity.
Sagi Y, Tavor I, Hofstetter S, Tzur-Moryosef S, Blumenfeld-Katzir T, Assaf Y.
Neuron. 2012 Mar 22;73(6):1195-203. Epub 2012 Mar 21.
http://www.sciencedirect.com/science/article/pii/S089662731200178X
and an accompanying short summary article:
Human structural plasticity at record speed.
Johansen-Berg H, Baptista CS, Thomas AG.
Neuron. 2012 Mar 22;73(6):1058-60. Epub 2012 Mar 21.
http://www.sciencedirect.com/science/article/pii/S0896627312002231

• 5/30: Sam and Pam (ONE TIME DAY/ROOM CHANGE: Wednesday 2-3pm in 300 Medical Plaza Room 3200)

Generative embedding for model-based classification of fMRI data.
Brodersen KH, Schofield TM, Leff AP, Ong CS, Lomakina EI, Buhmann JM, Stephan KE.
PLoS Comput Biol. 2011 Jun;7(6):e1002079. doi: 10.1371/journal.pcbi.1002079. Epub 2011 Jun 23.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121683

• 6/12: Emily

Rich-Club Organization of the Human Connectome
Martijn van den Heuvel, Olaf Sporns
http://www.jneurosci.org/content/31/44/15775.full

• 8/10: Jesse

Whole-brain, time-locked activation with simple tasks revealed using massive averaging and model-free analysis
Javier Gonzalez-Castillo, Ziad S. Saad, Daniel A. Handwerker, Souheil J. Inati, Noah Brenowitz, and Peter A. Bandettini
http://www.pnas.org/content/early/2012/03/14/1121049109.abstract