Neuroimaging+ Journal Club

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About the Group

During the Winter 2015 quarter we are meeting every other Thursday from 1-2pm in Gonda 3303. Many topics are welcomed including, but not limited to, neuroimaging methods, connectivity, genetics, cognitive neuroscience, neurological diseases/disorders, and new statistical approaches. Participants are welcome to present published papers or results from their own on-going research.


Winter 2015 Meeting Dates: January 15th, January 29th, February 12th, February 26th and March 12th


Please contact Tessa Harrison with any questions: tessaharrison[at]ucla[dot]edu .

Winter 2015 Meeting Topics

  • 01/15: Tessa Harrison (Bookheimer Lab)

Functional Connectivity in Autosomal Dominant and Late-Onset Alzheimer Disease
Thomas JB, Brier MR, Bateman RJ, et al.
http://archneur.jamanetwork.com/article.aspx?articleid=1890783

  • 01/29: Janelle Liu (Dapretto Lab)

Mapping the unconscious maintenance of a lost first language
Pierce LJ, Klein D, Chen J, Delcenserie A and Genesee F
http://www.pnas.org/content/111/48/17314.full.pdf+html

  • 2/12: Nathan Hutcheson (Feusner Lab)

Review Paper: Analysing Connectivity with Granger Causality and Dynamic Causal Modelling
Friston K, Moran R and Seth AK
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925802/

Experimental Paper: Altered Effective Connectivity Network of the Basal Ganglia in Low-Grade Hepatic Encephalopathy: A Resting-State fMRI Study with Granger Causality Analysis
Qi R, Zhang LJ, Zhong J, Zhang Z, Ling N, Jiao Q, Liao W, Zheng G and Lu G
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0053677

  • 2/26: Leanna Hernandez (Dapretto Lab)


  • 3/12: Nicco Reggente (Rissman Lab)




Past Quarters

Fall 2012

  • 11/20: Agatha

High-Resolution fMRI Reveals Laminar Differences in Neurovascular Coupling between Positive and Negative BOLD Responses
Jozien Goense, Hellmut Merkle, and Nikos K. Logothetis
Neuron 76, 629–639, November 8, 2012.
http://dx.doi.org/10.1016/j.neuron.2012.09.019

  • 11/6: Leo

Disentangling motor execution from motor imagery with the phantom limb
Estelle Raffin, Jérémie Mattout, Karen T. Reilly, Pascal Giraux
http://brain.oxfordjournals.org/content/135/2/582.long
AND a very short case study
The appearance of new phantom fingers postamputation in a phocomelus
Paul D. McGeoch & V. S. Ramachandran
http://dx.doi.org/10.1080/13554794.2011.556128

  • 10/23: Pam

Spectral Fingerprints of Large-Scale Neuronal Interactions
Markus Siegel, Tobias H. Donner & Andreas K. Engel
Nature Reviews Neuroscience 13, 121-134 (February 2012)
http://www.nature.com/nrn/journal/v13/n2/full/nrn3137.html
AND
Large-scale cortical correlation structure of spontaneous oscillatory activity
Joerg F Hipp, David J Hawellek, Maurizio Corbetta, Markus Siegel & Andreas K Engel
Nature Neuroscience 15, 884–890 (2012)
http://www.nature.com/neuro/journal/v15/n6/full/nn.3101.html

  • 10/9: Tessa

The Geometric Structure of the Brain Fiber Pathways
Van J. Wedeen, Douglas L. Rosene, Ruopeng Wang, Guangping Dai, Farzad Mortazavi, Patric Hagmann, Jon H. Kaas, Wen-Yih I. Tseng
http://www.sciencemag.org/content/335/6076/1628.full

And the new criticism + response in Science:
Comment on “The Geometric Structure of the Brain Fiber Pathways”
Marco Catani, Istvan Bodi, Flavio Dell’Acqua
http://www.sciencemag.org/content/337/6102/1605.4.full

Response to Comment on “The Geometric Structure of the Brain Fiber Pathways”
Van J. Wedeen, Douglas L. Rosene, Ruopeng Wang, Guangping Dai, Farzad Mortazavi, Patric Hagmann, Jon H. Kaas, Wen-Yih I. Tseng
http://www.sciencemag.org/content/337/6102/1605.5.full

  • 9/11: Nicco

Tracking cognitive fluctuations with multivoxel pattern time course (MVPTC) analysis
Chiu YC, Esterman MS, Gmeindl L, Yantis S.
Neuropsychologia. 2012 Mar;50(4):479-86. Epub 2011 Jul 19.

Winter 2013

  • 1/24: Kevin

Local and long-range functional connectivity is reduced in concert in autism spectrum disorders
Khan S, Gramfort A, Shetty NR, Kitzbichler MG, Ganesan S, Moran JM, Lee SM, Gabrieli JD, Tager-Flusberg HB, Joseph RM, Herbert MR, Hämäläinen MS, Kenet T.
PNAS 2013 http://www.pnas.org/content/early/2013/01/09/1214533110.long

  • 2/7: Mahsa

Measuring phase-amplitude coupling between neuronal oscillations of different frequencies
Tort AB, Komorowski R, Eichenbaum H, Kopell N
J Neurophysiol. 2010 http://jn.physiology.org/content/104/2/1195.long

  • 2/21: Agatha

EEG correlates of time-varying BOLD functional connectivity
Chang C, Liu Z, Chen MC, Liu X, Duyn JH
NeuroImage. 2013 http://www.sciencedirect.com/science/article/pii/S1053811913000967

  • 3/14: Pam

The spatiospectral characterization of brain networks: Fusing concurrent EEG spectra and fMRI maps
Bridwell D, Wu L, Eichele T, Calhoun V
http://www.sciencedirect.com/science/article/pii/S1053811912012098

  • 3/21: Sam

State-dependent differences between functional and effective connectivity of the human cortical motor system
Rehme AK, Eickhoff SB, Grefkes C
http://www.sciencedirect.com/science/article/pii/S1053811912011391



Spring 2013

  • 4/11: Jeiran Choupan (visiting student from the Centre for Advanced Imaging & Queensland Brain Institute)

Brain Decoding using Natural Stimulus fMRI

  • 4/25: Wei Li (Feusner Lab)

A Hierarchy of Temporal Receptive Windows in Human Cortex
Uri Hasson, Eunice Yang, Ignacio Vallines, David J. Heeger, Nava Rubin
http://www.jneurosci.org/content/28/10/2539.full.pdf+html

  • 5/9: Matt Anderson (Basso Lab)

Direct Injection of Noise to the Visual Cortex Decreases Accuracy but Increases Decision Confidence
Dobromir A. Rahev, Brian Maniscalco, Bruce Luber, Hakwan Lau, Sarah H Lisanby
http://jn.physiology.org/content/107/6/1556.full.pdf+html

  • 5/23: Leo Moore (Iacoboni Lab)

Empathy and Prosocial Behavior

  • 6/6: Nicco Reggente (Rissman Lab)

Decoding Unattended Fearful Faces with Whole-Brain Correlations: An Approach to Identify Condition-Dependent Large-Scale Functional Connectivity
Spiro P. Pantazatos, Ardesheer Talati, Paul Oavlidis, Joy Hirsch
http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002441


Fall 2013

  • 10/10: Tessa Harrison (Bookheimer Lab)

Developmental Changes in Organization of Structural Brain Networks
BS Khundrakpam, A Reid, J Brauer, F Carbonell, J Lewis, S Ameis, S Karama, J Lee, Z Chen, S Das and AC Evans
http://cercor.oxfordjournals.org/content/early/2012/07/10/cercor.bhs187.full.pdf+html


  • 10/24: Diane Goldenberg (Galvan and Fuligni Labs)

Talk title:
Assessing risk and reward in the scanner: the challenge of ecological validity
Accompanying Article:
Peers increase adolescent risk taking by enhancing activity in the brain's reward circuitry
J Chein, D Albert, L O'Brien, K Uckert and L Steinberg
http://onlinelibrary.wiley.com/doi/10.1111/j.1467-7687.2010.01035.x/pdf


  • 11/07: Wesley Kerr (Cohen Lab)

Automated MR image classification in temporal lobe epilepsy
NK Focke, M Yogarajah, MR Symms, O Gruber, W Paulus and JS Duncan
http://www.sciencedirect.com/science/article/pii/S1053811911008639


  • 11/21: Rachel Jonas (Bearden Lab)

Neuroanatomical phenotypes in a mouse model of the 22q11.2 microdeletion
J Ellegood, S Markx, JP Lerch, PE Steadman, C Genc, F Provenzano, SA Kushner, RM Henkelman, M Karaiorgou and JA Gogos
http://www.nature.com/mp/journal/vaop/ncurrent/pdf/mp2013112a.pdf


  • 12/05: John Coetzee (Monti Lab)

Intensive reasoning training alters patterns of brain connectivity at rest
Allyson P. Mackey, Alison T. Miller Singley, and Silvia A. Bunge
http://www.jneurosci.org/content/33/11/4796.full.pdf

Winter 2014

  • 1/16: Matt Schreiner (Bearden Lab)

Role of local network oscillations in resting-state functional connectivity
J Cabral, E Hugues, O Sporns and G Deco
http://www.sciencedirect.com/science/article/pii/S1053811911003880#

  • 1/30: Daya Alexander

The contribution of gliosis to diffusion tensor anisotropy and tractography following traumatic brain injury: validation in the rat using Fourier analysis of stained tissue sections
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3155707/pdf/awr161.pdf

  • 2/13: John Dell'Italia (Monti Lab)

Neural Networks of Colored Sequence Synesthesia
http://www.jneurosci.org/content/33/35/14098.full.pdf+html


  • 2/27: Tessa Harrison (Bookheimer Lab)

Methods to detect, characterize and remove motion artifact in resting state fMRI
http://www.sciencedirect.com/science/article/pii/S1053811913009117#


  • 3/13: Tiffany Chow (Rissman Lab)

Neural mechanisms of reactivation-induced updating that enhance and distort memory
http://www.pnas.org/content/early/2013/11/01/1319630110.full.pdf+html

Spring 2014

  • 4/10: Nicco Reggente (Rissman Lab)

A Common Cortical Metric for Spatial, Temporal, and Social Distance.
Parkinson, C, Liu, S and Wheatley, T
http://www.jneurosci.org/content/34/5/1979.full.pdf+html

  • 4/24: Katherine Lawrence (Rotating in Feusner Lab) and Rachel Jonas (Bearden Lab)

Affection Modulation of Cognitive Control is Determined by Performance-Contingency and Mediated by Ventromedial Prefrontal and Cingulate Cortex.
Braem, S, King, JA, Korb, FM, Krebs, RM, Notebaert,W, Egner, T.
http://www.jneurosci.org/content/33/43/16961.full.pdf+html

  • 5/8: Janelle Liu (Rotating in White Lab), Leanna Hernandez (Dapretto Lab) and Wesley Kerr (Cohen Lab)

Memory Consolidation by Replay of Stimulus-Specific Neural Activity
Deuker, L, Ollings, J, Fell, J, Kranz, TA, Mormann, F, Montag, C, Reuter, M, Elger, CE, Axmacher, N
http://www.jneurosci.org/content/33/49/19373.full.pdf+html

  • 5/22: David DiTullio (Carmichael Lab) and Tessa Harrison (Bookheimer Lab)

Extent of Bilateral Neuronal Network Reorganization and Functional Recovery in Relation to Stroke Severity
van Meer, MPA, Otte, WM, van der Marel, K, Nijboer, CH, Kavelaars, A, van der Sprenkel, JWB, Viergever, MA, Dijkhuizen, RM
http://www.jneurosci.org/content/32/13/4495.full.pdf+html

  • 5/29: Don Vaughn (Rotating in Cohen Lab) and Wei Li (Feusner Lab)

Fall 2014

  • 10/16: Wesley Kerr (Cohen Lab)

Original Research Presentation: "Metabolic Alterations in Psychogenic Seizures: Neural Networks versus T-statistics"

  • 10/23: Kathy Lawrence

Acute Tryptophan Depletion Promotes an Anterior-to-Posterior fMRI Activation Shift During Task Switching in Older Adults
Lamar, M, Craig, M, Daly, EM, Cutter, WJ, Tang, C, Brammer, M, Rubia, K and Murphy DGM
http://onlinelibrary.wiley.com/doi/10.1002/hbm.22187/pdf

  • 11/6: Stephanie Delgado

Bringing CLARITY to Gray Matter Atrophy
Spence RD, Kurth F, Itoh N, Mongerson CRL, Wailes SH, Peng MS and MacKenzie-Graham AJ
http://www.sciencedirect.com/science/article/pii/S1053811914005898#

Additional background article on CLARITY:
http://www.nature.com/nmeth/journal/v10/n6/full/nmeth.2481.html

  • 11/20: Teena Moody, Don Vaughn

Intrinsic and Task-Evoked Network Architectures of the Human Brain
Cole MW, Basset DS, Power JD, Braver TS and Peterson SE
http://www.sciencedirect.com/science/article/pii/S0896627314004000

  • 12/4: Nicco Reggente, Jeff Chiang

Coupled Neural Systems Underlie the Production and Comprehension of Naturalistic Narrative Speech
Silbert L, Honey CJ, Simony E, Poeppel D and Hasson U
http://www.pnas.org/content/111/43/E4687.full.pdf+html