Hoffman2:Software Tools:FMRIprep: Difference between revisions

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[https://fmriprep.org/en/stable/usage.html Fmriprep Command Line Usage]
[https://fmriprep.org/en/stable/usage.html Fmriprep Command Line Usage]


From version '''23.1.3''', FMRIprep is provided through Apptainer
FMRIprep is provided through Apptainer


  module load apptainer
  module load apptainer

Revision as of 18:06, 8 April 2026

FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data

Official Website

Fmriprep Command Line Usage

FMRIprep is provided through Apptainer

module load apptainer
apptainer run --cleanenv /u/project/CCN/apps/fmriprep/rh7/25.1.3/23.1.3-fmriprep.sif \
path/to/data/dir path/to/output/dir \
participant --participant-label label