Hoffman2:Software Tools: Difference between revisions
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==Python2.7== | ==Python2.7== | ||
Gentoo Prefix version of Python 2.7. Site packages listed below were installed using pip unless otherwise noted. | Gentoo Prefix version of Python 2.7. Site packages listed below were installed using pip unless otherwise noted. | ||
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See this website for how to cite using the MPI Kmeans tool. | See this website for how to cite using the MPI Kmeans tool. | ||
[http://mloss.org/software/view/48/] | [http://mloss.org/software/view/48/] | ||
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Revision as of 21:03, 14 November 2017
There is an FMRI usergroup on Hoffman2 which is maintained for groups doing Neuroimaging work at UCLA. Tools like FSL, FreeSurfer, AFNI and Nibabel are maintained for this group separate from normal Hoffman2 programs. In order to take advantage of these tools, you need to setup your bash profile properly.
Below is a list of the available software tools. We will do our best to update it as changes are made.
AFNI
| Version | Install Date | Notes |
|---|---|---|
| 2016.10.18-16.3.11 | 2016.11.20 | Current |
BrainSuite
| Version Number | Install Date | Notes |
|---|---|---|
| 15c | 2016.02.18 | Current |
Caret
| Version | Install Date | Notes |
|---|---|---|
| 5.65 (2012.01.27) | 2013.07.15 | Current, not folded into the main profile |
Chronux
| Version | Install Date | Notes |
|---|---|---|
| 2.10 | 2013.02.26 | Current |
dcm2nii
| Version | Install Date | Notes |
|---|---|---|
| 2013.06.06 | 2014.03.06 | |
| 2011.11.11 | circa 2011 | Current |
EEGLAB
| Version | Install Date | Notes |
|---|---|---|
| 13.1.1b | 2014.01.29 | Current |
| 12.0.2.5b | 2013.11.14 | |
| 11.0.5.4b | 2013.11.14 | |
| 12.0.0.0b | 2012.12.10 | |
| 11.0.0.0b | 2012.02.21 | |
| 10.2.5.8b | 2012.02.21 |
FreeSurfer
| Version | Install Date | Notes |
|---|---|---|
| 5.3.0 | 2013.06.18 | Current |
| 5.2.0 | 2013.03.27 | |
| 5.1.0 | 2011.11.14 | |
| 5.0.0 | circa 2010 | |
| 4.4.0 | circa 2009 | |
| 4.0.5 | circa 2008 |
FSL
| Version Number | Install Date | Notes |
|---|---|---|
| 5.0.7 | 2013.10.17 | Current (2014.10.10-) |
| 5.0.6 | 2013.12.18 | (2013.12.18-2014.10.10) |
| 5.0.5 | 2013.10.17 | (2013.10.17-2013.12.17) |
| 5.0.4 | 2013.06.18 | |
| 5.0.2 | 2013.02.19 | |
| 5.0.1 | 2012.10.01 | |
| 5.0.0 | 2012.09.14 | |
| 4.1.9 | 2011.12.01 | |
| 4.1.8 | circa 2011.06 | |
| 4.1.7 | circa 2011.11 | |
| 4.1.4 | circa 2009 | |
| 4.1.3 | circa 2009 | |
| 4.1.1 | circa 2008 | |
| 4.1.0 | circa 2008 | |
| 4.0.4 | circa 2008 |
ITKGray
| Version Number | Install Date | Notes |
|---|---|---|
| 080803 | 2009.11.19 | Current |
| 080128 | 2009.11.13 |
SPM
| Version | Last Patch Applied | Last Checked Date | Notes |
|---|---|---|---|
| SPM8 | 5236 | 2014.01 | Current |
| SPM5 | Unknown | N/A | No longer supported |
TrackVis/Diffusion Toolkit
| Tool | Version Number | Last Checked Date | Notes |
|---|---|---|---|
| TrackVis | 0.5.2.2 | 2014.03.06 | |
| Diffusion Toolkit | 0.6.2.2 | 204.03.06 |
WEKA
| Version Number | Install Date | Notes |
|---|---|---|
| 3.7.10 | 2014.03.03 | Current |
| 3.6.5 | circa 2011.08 |