MR: Difference between revisions
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A collection of information about MR data from collection to processing/analysis. | A collection of information about MR data from collection to processing/analysis. | ||
==Collection== | ==Collection== | ||
How does one collect MR data? | |||
===Staglin=== | ===Staglin=== | ||
[[ | The [http://www.semel.ucla.edu/staglin Staglin IMHRO Center for Cognitive Neuroscience] is one of our main data collection facilities. | ||
*[[Staglin MR Suite]] | |||
=== | ===EEG/FMRI=== | ||
Concurrent data collection of EEG and FMRI is possible at the Staglin Center. | |||
*[[StaglinCenter:EEG-FMRI]] | |||
<!--===Transfer=== | |||
Data is automatically transferred from a DICOM server to our processing server ([[Hoffman2]]) nightly.--> | |||
==Directory Structure== | ==Directory Structure== | ||
[[MR:DirectoryStructure]] | Standards are important. And we've got standards about how our MR data should be kept. | ||
*[[MR:DirectoryStructure]] | |||
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===Tutorials=== | ===Tutorials=== | ||
Some helpful tutorials about how to process MR data. | Some helpful tutorials about how to process MR data. | ||
*[http://fsl.fmrib.ox.ac.uk/fslcourse/ FSL and FreeSurfer Course] | |||
===Preprocessing=== | ===Preprocessing=== | ||
Certain preprocessing steps are done to all data. This is facilitated by an automated script. | Certain preprocessing steps are done to all data. This is facilitated by an automated script. | ||
[[MR:Processing:Preprocessing]] | *[[MR:Processing:Preprocessing]] | ||
===DTI=== | ===DTI=== | ||
[[MR:Processing:DTI]] | *[[MR:Processing:DTI]] | ||
===Additional Tools=== | |||
*[https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Software_Tools Software on Hoffman2] | |||
Latest revision as of 01:55, 26 March 2021
A collection of information about MR data from collection to processing/analysis.
Collection
How does one collect MR data?
Staglin
The Staglin IMHRO Center for Cognitive Neuroscience is one of our main data collection facilities.
EEG/FMRI
Concurrent data collection of EEG and FMRI is possible at the Staglin Center.
Directory Structure
Standards are important. And we've got standards about how our MR data should be kept.
Processing
How to process MR data.
Tutorials
Some helpful tutorials about how to process MR data.
Preprocessing
Certain preprocessing steps are done to all data. This is facilitated by an automated script.