User contributions for Hwang
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2 July 2025
- 16:5816:58, 2 July 2025 diff hist +10 Hoffman2:Scripts:setup subject 3 →Basic Usage current
- 16:5816:58, 2 July 2025 diff hist 0 Hoffman2:Scripts:setup subject 3 →Basic Usage
- 16:5716:57, 2 July 2025 diff hist −4 Hoffman2:Scripts:setup subject 3 →Basic Usage
- 16:5716:57, 2 July 2025 diff hist +9 Hoffman2:Scripts:setup subject 3 →Basic Usage
- 16:5516:55, 2 July 2025 diff hist −5 Hoffman2:Scripts:setup subject 3 →Basic Usage
- 16:5516:55, 2 July 2025 diff hist +110 Hoffman2:Scripts:setup subject 3 →Basic Usage
10 June 2025
- 22:2422:24, 10 June 2025 diff hist 0 Hoffman2:Scripts:clean up.sh No edit summary current
- 22:2222:22, 10 June 2025 diff hist +4 Hoffman2:Scripts:clean up.sh No edit summary
- 22:2122:21, 10 June 2025 diff hist −2 Hoffman2:Scripts:clean up.sh No edit summary
- 22:2122:21, 10 June 2025 diff hist +1 Hoffman2:Scripts:clean up.sh No edit summary
- 22:1822:18, 10 June 2025 diff hist +7 Hoffman2:Scripts:clean up.sh No edit summary
- 22:1722:17, 10 June 2025 diff hist +34 Hoffman2:Scripts:clean up.sh No edit summary
- 22:1522:15, 10 June 2025 diff hist +344 Hoffman2:Scripts:clean up.sh No edit summary
19 May 2025
- 22:3622:36, 19 May 2025 diff hist +4 Hoffman2:Scripts:clean up.sh No edit summary
- 22:3522:35, 19 May 2025 diff hist −6 Hoffman2:Scripts:clean up.sh No edit summary
- 22:3522:35, 19 May 2025 diff hist −1 Hoffman2:Scripts:clean up.sh No edit summary
- 22:3522:35, 19 May 2025 diff hist +111 Hoffman2:Scripts:clean up.sh No edit summary
- 22:2622:26, 19 May 2025 diff hist +165 Hoffman2:Scripts:clean up.sh No edit summary
- 22:2022:20, 19 May 2025 diff hist +413 N Hoffman2:Scripts:clean up.sh Created page with "This script is used to clean up certain FSL processing files. 1. tsplot 2. feat folders (+.feat) 3. FSL stdout and stderr files (such as *.e28678.8, *.o4436) 4. files end with .con .grp .Icon .mat Load the module first module load ccnscripts For clean up feat folders, clean_up.sh -f PATH/TO/FOLDER For .o and .e files clean_up.sh -o PATH/TO/FOLDER For tsplot clean_up.sh -t PATH/TO/FOLDER"
- 22:1522:15, 19 May 2025 diff hist +108 Hoffman2:Scripts No edit summary current
13 March 2025
- 18:1718:17, 13 March 2025 diff hist +4 Hoffman2:Software Tools:Osprey →Osprey current
- 18:1218:12, 13 March 2025 diff hist +5 Hoffman2:Software Tools:Osprey No edit summary
- 18:0818:08, 13 March 2025 diff hist +1 Hoffman2:Software Tools:Osprey →Osprey
- 18:0718:07, 13 March 2025 diff hist +395 Hoffman2:Software Tools:Osprey No edit summary
- 18:0518:05, 13 March 2025 diff hist +297 N Hoffman2:Software Tools:Osprey Created page with "==Osprey== 1. Start an interactive session by, for example qrsh -l h_rt=2:00:00,h_data=24G 2. In the work node, run the following commands module load matlab/R2020a export MATLABPATH=/u/project/CCN/apps/spm12 matlab The command "matlab" will open Matlab GUI interface 3. Install Toolboxes"
- 18:0118:01, 13 March 2025 diff hist +294 Hoffman2:Software Tools No edit summary current
15 November 2024
- 19:0119:01, 15 November 2024 diff hist +6 Incidental Finding Report Tool No edit summary
- 19:0019:00, 15 November 2024 diff hist +12 Incidental Finding Report Tool No edit summary
- 19:0019:00, 15 November 2024 diff hist +29 Incidental Finding Report Tool No edit summary
- 15:0615:06, 15 November 2024 diff hist −6 Incidental Finding Report Tool No edit summary
14 November 2024
- 19:3719:37, 14 November 2024 diff hist −9 Incidental Finding Report Tool No edit summary
- 19:3619:36, 14 November 2024 diff hist +11 Incidental Finding Report Tool No edit summary
- 19:1919:19, 14 November 2024 diff hist +13 Incidental Finding Report Tool No edit summary
- 19:1819:18, 14 November 2024 diff hist +35 Incidental Finding Report Tool No edit summary
- 19:1719:17, 14 November 2024 diff hist +35 Incidental Finding Report Tool →Incidental Finding Report Tool
- 19:1519:15, 14 November 2024 diff hist +220 Incidental Finding Report Tool No edit summary
17 October 2024
- 23:4423:44, 17 October 2024 diff hist +12 Incidental Finding Report Tool →Incidental Finding Report Tool
- 23:4223:42, 17 October 2024 diff hist +50 N File:Incidental finding report flow.png Incidental finding report flow chart current
- 00:1700:17, 17 October 2024 diff hist −1 Incidental Finding Report Tool No edit summary
- 00:1500:15, 17 October 2024 diff hist 0 Incidental Finding Report Tool No edit summary
- 00:1500:15, 17 October 2024 diff hist +6 Incidental Finding Report Tool No edit summary
- 00:1400:14, 17 October 2024 diff hist +33 Incidental Finding Report Tool No edit summary
- 00:1200:12, 17 October 2024 diff hist 0 N File:Incidental finding.png No edit summary current
12 September 2024
- 16:3816:38, 12 September 2024 diff hist +1 Incidental Finding Report Tool No edit summary
- 16:3716:37, 12 September 2024 diff hist −64 Incidental Finding Report Tool →Incidental Finding Report Tool
- 16:3516:35, 12 September 2024 diff hist +43 Incidental Finding Report Tool No edit summary
- 16:3216:32, 12 September 2024 diff hist +65 Incidental Finding Report Tool No edit summary
- 03:2203:22, 12 September 2024 diff hist −25 Incidental Finding Report Tool No edit summary
- 00:5800:58, 12 September 2024 diff hist +1 Incidental Finding Report Tool →Incidental Finding Report Tool
- 00:5700:57, 12 September 2024 diff hist +121 Incidental Finding Report Tool No edit summary
- 00:5500:55, 12 September 2024 diff hist +10 Incidental Finding Report Tool →Incidental Finding Report Tool
- 00:5400:54, 12 September 2024 diff hist +1 Incidental Finding Report Tool →Incidental Finding Report Tool
- 00:5300:53, 12 September 2024 diff hist +1 Incidental Finding Report Tool →Incidental Finding Report Tool
- 00:5300:53, 12 September 2024 diff hist −3 Incidental Finding Report Tool →Incidental Finding Report Tool
- 00:5200:52, 12 September 2024 diff hist +850 Incidental Finding Report Tool No edit summary
- 00:4600:46, 12 September 2024 diff hist +36 N Incidental Finding Report Tool Created page with "== Incidental Finding Report Tool =="
- 00:4500:45, 12 September 2024 diff hist −53 Main Page No edit summary
- 00:4400:44, 12 September 2024 diff hist +122 Main Page →Resources
27 August 2024
- 23:0123:01, 27 August 2024 diff hist +135 Hoffman2:Scripts:gen movie.py →Setup Environment current
26 August 2024
- 22:4622:46, 26 August 2024 diff hist +47 Hoffman2:Scripts:gen movie.py →Usage/Help
- 22:3922:39, 26 August 2024 diff hist +8 Hoffman2:Scripts:gen movie.py →Example
- 22:3922:39, 26 August 2024 diff hist +19 Hoffman2:Scripts:gen movie.py →Usage/Help
- 22:3822:38, 26 August 2024 diff hist +80 Hoffman2:Scripts:gen movie.py →Usage/Help
20 August 2024
- 18:0918:09, 20 August 2024 diff hist −4 CCN Workshops No edit summary current
- 17:5117:51, 20 August 2024 diff hist +628 CCN Workshops No edit summary
- 17:3317:33, 20 August 2024 diff hist −31 CCN Workshops →Scheduled Workshops
- 17:3017:30, 20 August 2024 diff hist +44 CCN Workshops No edit summary
- 17:2917:29, 20 August 2024 diff hist +1,476 CCN Workshops →Past Workshops
16 August 2024
- 01:4901:49, 16 August 2024 diff hist −1 Hoffman2:Scripts:gen movie.py →Example:
- 01:4001:40, 16 August 2024 diff hist +99 Hoffman2:Scripts:gen movie.py →Example:
- 01:3901:39, 16 August 2024 diff hist +160 Hoffman2:Scripts:gen movie.py →Example:
- 01:3201:32, 16 August 2024 diff hist +4 Hoffman2:Scripts:gen movie.py No edit summary
- 01:3201:32, 16 August 2024 diff hist +300 Hoffman2:Scripts:gen movie.py →Usage/Help
14 August 2024
- 22:1322:13, 14 August 2024 diff hist +29 Hoffman2:Scripts:gen movie.py →Usage/Help
- 22:1022:10, 14 August 2024 diff hist +1,003 N Hoffman2:Scripts:gen movie.py Created page with "==Purpose== To convert a 3D MRI image in nifti format to a movie. ==Setup Environment== To use this script, you need to load Anaconda module first and use conda environment ccn_py37<br> ccn_py37 contains nibabel which is need to read nifti files. ffmpeg is also needed for this script to run. module load anaconda3 conda activate /u/project/CCN/apps/conda/rh7/ccn_py37 module load ffmpeg/5.0.1 ==Usage/Help== To see the usage of this script ./gen_movie.py --help..."
- 22:0122:01, 14 August 2024 diff hist +96 Hoffman2:Scripts No edit summary
28 March 2024
- 22:0322:03, 28 March 2024 diff hist −1 Hoffman2:Software Tools: NDATools →Start an interactive mode current
- 22:0322:03, 28 March 2024 diff hist +3 Hoffman2:Software Tools: NDATools →Use conda env
- 21:5921:59, 28 March 2024 diff hist +7 Hoffman2:Software Tools: NDATools →Generate Temporary Tokens
- 21:5921:59, 28 March 2024 diff hist +37 Hoffman2:Software Tools: NDATools →Load modules
6 March 2024
- 22:5322:53, 6 March 2024 diff hist −7 Hoffman2:Data Transfer →General Usage current
- 22:5222:52, 6 March 2024 diff hist −66 Hoffman2:Data Transfer →General Usage
19 January 2024
- 18:3018:30, 19 January 2024 diff hist +19 Dicom →From SSH command line
1 November 2023
- 00:2100:21, 1 November 2023 diff hist +76 Hoffman2:Python →CCN existing Conda Environments current
- 00:2000:20, 1 November 2023 diff hist +4 Hoffman2:Python →Use Conda for Python virtual environment
22 August 2023
28 July 2023
- 20:1420:14, 28 July 2023 diff hist +20 X2go No edit summary current
- 20:1320:13, 28 July 2023 diff hist +14 X2go No edit summary
6 June 2023
- 23:1223:12, 6 June 2023 diff hist +161 CCN Workshops →CCN Workshops
3 April 2023
- 21:4021:40, 3 April 2023 diff hist 0 Hoffman2:Python No edit summary
17 March 2023
- 19:3919:39, 17 March 2023 diff hist −72 Hoffman2:Software Tools:downloadcmd No edit summary current
- 19:3819:38, 17 March 2023 diff hist +1 Hoffman2:Software Tools:downloadcmd No edit summary
- 19:3719:37, 17 March 2023 diff hist +74 Hoffman2:Software Tools:downloadcmd No edit summary
- 19:3019:30, 17 March 2023 diff hist +12 Hoffman2:Software Tools:downloadcmd No edit summary
- 19:2919:29, 17 March 2023 diff hist −2 Hoffman2:Software Tools:downloadcmd →A wrapper script of NDATools has been developed by our CCN member Dylan Hughes.
- 19:2819:28, 17 March 2023 diff hist −10 Hoffman2:Software Tools:downloadcmd No edit summary
- 19:2519:25, 17 March 2023 diff hist +14 Hoffman2:Software Tools:downloadcmd No edit summary
- 19:2419:24, 17 March 2023 diff hist +8 Hoffman2:Software Tools:downloadcmd No edit summary
- 19:1919:19, 17 March 2023 diff hist +5,589 N Hoffman2:Software Tools:downloadcmd Created page with "A wrapper script of NDATools has been developed by our CCN user Dylan Hughes. Here's the manual, Downloading brains from ABCD, by Dylan Hughes, 12/05/2022 This will help yo..."
- 19:1719:17, 17 March 2023 diff hist +14 Hoffman2:Software Tools:NDATools No edit summary