Hoffman2:Submit job

From Center for Cognitive Neuroscience
Revision as of 22:09, 14 November 2017 by Dmargolis (talk | contribs)
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#!/bin/tcsh

  1. $ -cwd
  2. error = Merged with joblog
  3. $ -o joblog.$JOB_ID
  4. $ -j y
  5. $ -pe shared 2
  6. $ -l h_rt=8:00:00,h_data=4G
  7. Email address to notify
  8. $ -M $USER@mail
  9. Notify when
  10. $ -m bea
  1. load the job environment:

source /u/local/Modules/default/init/modules.csh module use /u/project/CCN/apps/modulefiles module load fsl

  1. This is optional
  2. More info here: https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:FSL

setenv NO_FSL_JOBS true

  1. Now do something with fsl, feat, etc.

sleep 600</nowiki>