Hoffman2:Submit job: Difference between revisions
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(Created page with "<code>#!/bin/tcsh #$ -cwd # error = Merged with joblog #$ -o joblog.$JOB_ID #$ -j y #$ -pe shared 2 #$ -l h_rt=8:00:00,h_data=4G # Email address to notify #$ -M $USER@mail # N...") |
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<code>#!/bin/tcsh | <code><nowiki></nowiki>#!/bin/tcsh | ||
#$ -cwd | #$ -cwd | ||
# error = Merged with joblog | # error = Merged with joblog | ||
Line 21: | Line 21: | ||
# Now do something with fsl, feat, etc. | # Now do something with fsl, feat, etc. | ||
sleep 600</code> | sleep 600</nowiki></code> |
Revision as of 22:09, 14 November 2017
#!/bin/tcsh
- $ -cwd
- error = Merged with joblog
- $ -o joblog.$JOB_ID
- $ -j y
- $ -pe shared 2
- $ -l h_rt=8:00:00,h_data=4G
- Email address to notify
- $ -M $USER@mail
- Notify when
- $ -m bea
- load the job environment:
source /u/local/Modules/default/init/modules.csh
module use /u/project/CCN/apps/modulefiles
module load fsl
- This is optional
- More info here: https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:FSL
setenv NO_FSL_JOBS true
- Now do something with fsl, feat, etc.
sleep 600</nowiki>