Hoffman2:Software Tools: FMRIprep: Difference between revisions
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For more details, please check FMRIprep's [https://www.nipreps.org/apps/singularity/ | official site ] | For more details, please check FMRIprep's [https://www.nipreps.org/apps/singularity/ | official site ] | ||
* FMRIprep is no longer a module in | * FMRIprep is no longer a module in Hoffman2, please use the container version | ||
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Revision as of 23:31, 26 October 2021
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.
module load singularity singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif exit ##to stop container
Or use the following command to run it
singularity run --cleanenv fmriprep.sif path/to/data/dir path/to/output/dir \ participant --participant-label label
For more details, please check FMRIprep's | official site
- FMRIprep is no longer a module in Hoffman2, please use the container version