Hoffman2:Software Tools: FMRIprep: Difference between revisions
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exit ##to stop container | exit ##to stop container | ||
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For using FMRIprep module in Hoffman, the following modules are needed as well | For using FMRIprep module in Hoffman, the following modules are needed as well | ||
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fmriprep version 20.1.1 has bug with multi echo scans. | fmriprep version 20.1.1 has bug with multi echo scans. --> | ||
Revision as of 23:14, 26 October 2021
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.
module load singularity singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif exit ##to stop container