Hoffman2:Job Submission Templates: Difference between revisions
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*Submit job example | *[[Hoffman2:Submit_job_example|Submit job example]] | ||
*Submit job example (tcsh) same as above, written for tcsh | **example script for submitting a single job | ||
*Submit jobarray example example script for submitting a jobarray with hard-coded array values | *[[Hoffman2:Submit_job_example_(tcsh)|Submit job example (tcsh)]] | ||
*Submit jobarray example (readarray) example script for submitting a jobarray with an array read in from a file, e.g. 'subjects.txt' | **same as above, written for tcsh | ||
*Submit jobarray example | |||
**example script for submitting a jobarray with hard-coded array values | |||
*Submit jobarray example (readarray) | |||
**example script for submitting a jobarray with an array read in from a file, e.g. 'subjects.txt' | |||
To work with these example scripts: | |||
#Edit the "preamble" content at the top to adjust the memory (h_data) and run time (h_rt). You can also adjust the number of cores: 2 cores is '-pe shared 2'. I recommend 2, 4, or 8 for this value. Be aware that the number of cores is a multiplier for the RAM. h_data=4G and 2 cores is 8G total. | #Edit the "preamble" content at the top to adjust the memory (h_data) and run time (h_rt). You can also adjust the number of cores: 2 cores is '-pe shared 2'. I recommend 2, 4, or 8 for this value. Be aware that the number of cores is a multiplier for the RAM. h_data=4G and 2 cores is 8G total. | ||
#Put your script content at the bottom. | #Put your script content at the bottom. | ||
#Submit directly to the job scheduler like this: <code>qsub myscript.sh</code> | #Submit directly to the job scheduler like this: <code>qsub myscript.sh</code> | ||
Revision as of 22:49, 14 November 2017
- Submit job example
- example script for submitting a single job
- Submit job example (tcsh)
- same as above, written for tcsh
- Submit jobarray example
- example script for submitting a jobarray with hard-coded array values
- Submit jobarray example (readarray)
- example script for submitting a jobarray with an array read in from a file, e.g. 'subjects.txt'
To work with these example scripts:
- Edit the "preamble" content at the top to adjust the memory (h_data) and run time (h_rt). You can also adjust the number of cores: 2 cores is '-pe shared 2'. I recommend 2, 4, or 8 for this value. Be aware that the number of cores is a multiplier for the RAM. h_data=4G and 2 cores is 8G total.
- Put your script content at the bottom.
- Submit directly to the job scheduler like this:
qsub myscript.sh