Hoffman2:Software Tools:dmriprep

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dmriprep

Use singularity exec to execute a specific command within the container. 

module load apptainer
apptainer exec /u/project/CCN/apps/dmriprep/dfmriprep.sif dmriprep -h  
apptainer exec /u/project/CCN/apps/dmriprep/dfmriprep.sif data/bids_root/ out/ participant -w work/

Use apptainer shell to interact with the container's environment through a shell interface. 

module load apptainer
apptainer shell --userns /u/project/CCN/apps/dmriprep/dfmriprep.sif 
dmriprep -h


Comprehensive documentation on dmriprep can be found at: https://www.nipreps.org/dmriprep/usage.html#usage

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