Hoffman2:Scripts:switch freesurfer: Difference between revisions
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(Created page with "==Overview== Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2. ==Usage== ===Initialization / Switching === If you have never used the tool...") |
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[[Hoffman2:Scripts | Back to Hoffman2 Scripts]] | |||
<blockquote style="border: solid red 2px; font-weight: bold; padding: 2px; background-color: lightgray;">This page is deprecated. Please see [[Hoffman2:Modules]] for more information about CCN-supported software on Hoffman2.</blockquote> | |||
<!--==Overview== | |||
Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2. | |||
==Usage== | ==Usage== | ||
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Call the program without any options, or with "-h" or "--help" to see the full usage and help information | Call the program without any options, or with "-h" or "--help" to see the full usage and help information | ||
$ switch_freesurfer | $ switch_freesurfer | ||
Description: switch_freesurfer easily and cleanly switches between various | Description: switch_freesurfer easily and cleanly switches between various FreeSurfer versions. | ||
Usage: switch_freesurfer [OPTIONS] | Usage: switch_freesurfer [OPTIONS] | ||
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-h, --help Display this help/usage message | -h, --help Display this help/usage message | ||
-v, --verbose Verbose output | -v, --verbose Verbose output | ||
-s, --switch VERSION Designate the appropriate | -s, --switch VERSION Designate the appropriate FreeSurfer version. | ||
If switching between versions, you must log out | If switching between versions, you must log out | ||
then back it to reset up your environment. | then back it to reset up your environment. | ||
Available versions are: 4.0.5, 4.4.0, 5.0.0, 5.1.0 | Available versions are: 4.0.5, 4.4.0, 5.0.0, 5.1.0 | ||
-c, --check Checks for current | -c, --check Checks for current FreeSurfer version being used | ||
-d, --delete Stops using this system so you instead use the current version | -d, --delete Stops using this system so you instead use the current version | ||
of the tool at all times. You MUST log out and then back | of the tool at all times. You MUST log out and then back | ||
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switch_freesurfer --switch 5.0.0 | switch_freesurfer --switch 5.0.0 | ||
switch_freesurfer -h | switch_freesurfer -h | ||
switch_freesurfer --check | switch_freesurfer --check--> | ||
Latest revision as of 14:20, 8 July 2017
This page is deprecated. Please see Hoffman2:Modules for more information about CCN-supported software on Hoffman2.