Hoffman2:Scripts:clean up.sh: Difference between revisions
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(Created page with "This script is used to clean up certain FSL processing files. 1. tsplot 2. feat folders (+.feat) 3. FSL stdout and stderr files (such as *.e28678.8, *.o4436) 4. files end with .con .grp .Icon .mat Load the module first module load ccnscripts For clean up feat folders, clean_up.sh -f PATH/TO/FOLDER For .o and .e files clean_up.sh -o PATH/TO/FOLDER For tsplot clean_up.sh -t PATH/TO/FOLDER") |
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This script is used to clean up | This script is used to clean up the following files. | ||
1. feat folders (+.feat) | |||
2. FSL stdout and stderr files (such as *.e28678.8, *.o4436) | |||
3. files end with .con .grp .Icon .mat | |||
4. tsplot | |||
5. core.[0-9] | |||
Load the module first | Load the module first | ||
module load ccnscripts | module load ccnscripts | ||
<nowiki>*</nowiki> If you just want to see what files will be deleted without really deleting them, add --dryrun, e.g. | |||
clean_up.sh -f --dryrun /PATH/TO/FOLDER | |||
For clean up feat folders, | For clean up feat folders, | ||
clean_up.sh -f PATH/TO/FOLDER | clean_up.sh -f /PATH/TO/FOLDER | ||
For .o and .e files | For .o and .e files | ||
clean_up.sh -o PATH/TO/FOLDER | clean_up.sh -o /PATH/TO/FOLDER | ||
For .con .grp .Icon .mat | |||
clean_up.sh -g /PATH/TO/FOLDER | |||
For tsplot | For tsplot | ||
clean_up.sh -t PATH/TO/FOLDER | clean_up.sh -t /PATH/TO/FOLDER | ||
For core.[0-9] | |||
clean_up.sh -c /PATH/TO/FOLDER | |||
Log File:<br> | |||
A log file will be generated under the folder where you run it, named as "clean_up_log.YYYYMMDD_ss"<br> | |||
<nowiki>*</nowiki> What if I want to recover some of the deleted files? | |||
This script will move selected files to your $SCRATCH folder. In case you want to recover files being removed by this script, you can look for them under your $SCRATCH/YYYYMMDD_mmssms/ folder. | |||
Latest revision as of 22:24, 10 June 2025
This script is used to clean up the following files.
1. feat folders (+.feat) 2. FSL stdout and stderr files (such as *.e28678.8, *.o4436) 3. files end with .con .grp .Icon .mat 4. tsplot 5. core.[0-9]
Load the module first
module load ccnscripts
* If you just want to see what files will be deleted without really deleting them, add --dryrun, e.g.
clean_up.sh -f --dryrun /PATH/TO/FOLDER
For clean up feat folders,
clean_up.sh -f /PATH/TO/FOLDER
For .o and .e files
clean_up.sh -o /PATH/TO/FOLDER
For .con .grp .Icon .mat
clean_up.sh -g /PATH/TO/FOLDER
For tsplot
clean_up.sh -t /PATH/TO/FOLDER
For core.[0-9]
clean_up.sh -c /PATH/TO/FOLDER
Log File:
A log file will be generated under the folder where you run it, named as "clean_up_log.YYYYMMDD_ss"
* What if I want to recover some of the deleted files?
This script will move selected files to your $SCRATCH folder. In case you want to recover files being removed by this script, you can look for them under your $SCRATCH/YYYYMMDD_mmssms/ folder.