FSL: Useful commands: Difference between revisions
Jump to navigation
Jump to search
m (5 revisions) |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
fslmaths point -kernel sphere 9 -fmean sphereres -odt float<br> | fslmaths point -kernel sphere 9 -fmean sphereres -odt float<br> | ||
Note that in the first command I do "-mul 0 -add 1" to make sure that the whole image is full of | Note that in the first command I do "-mul 0 -add 1" to make sure that the whole image is full of zeros before adding one to the ROI. | ||
Latest revision as of 03:13, 16 January 2014
Create a spherical ROI using fslmaths:
fslmaths $FSLDIR/data/standard/MNI152_T1_2mm -mul 0 -add 1 -roi 50 1 50 1 50 1 0 1 point -odt float
fslmaths point -kernel sphere 9 -fmean sphereres -odt float
Note that in the first command I do "-mul 0 -add 1" to make sure that the whole image is full of zeros before adding one to the ROI.