Hoffman2:Scripts:clean up.sh: Difference between revisions
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(Created page with "This script is used to clean up certain FSL processing files. 1. tsplot 2. feat folders (+.feat) 3. FSL stdout and stderr files (such as *.e28678.8, *.o4436) 4. files end with .con .grp .Icon .mat Load the module first module load ccnscripts For clean up feat folders, clean_up.sh -f PATH/TO/FOLDER For .o and .e files clean_up.sh -o PATH/TO/FOLDER For tsplot clean_up.sh -t PATH/TO/FOLDER") |
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This script is used to clean up | This script is used to clean up the following files. | ||
1. tsplot | 1. tsplot | ||
| Line 5: | Line 5: | ||
3. FSL stdout and stderr files (such as *.e28678.8, *.o4436) | 3. FSL stdout and stderr files (such as *.e28678.8, *.o4436) | ||
4. files end with .con .grp .Icon .mat | 4. files end with .con .grp .Icon .mat | ||
Load the module first | Load the module first | ||
module load ccnscripts | module load ccnscripts | ||
For clean up feat folders, | For clean up feat folders, | ||
clean_up.sh -f PATH/TO/FOLDER | clean_up.sh -f /PATH/TO/FOLDER | ||
For .o and .e files | For .o and .e files | ||
clean_up.sh -o PATH/TO/FOLDER | clean_up.sh -o /PATH/TO/FOLDER | ||
For tsplot | For tsplot | ||
clean_up.sh -t PATH/TO/FOLDER | clean_up.sh -t /PATH/TO/FOLDER | ||
Log File:<br> | |||
A log file will be generated under the folder where you run it, named as "clean_up_log.YYYYMMDD_ss" | |||
This script will moved selected files to $SCRATCH folder. In case you want to recover files being cleaned up by this script, you can look for them in your $SCRATCH folder | |||
Latest revision as of 22:36, 19 May 2025
This script is used to clean up the following files.
1. tsplot 2. feat folders (+.feat) 3. FSL stdout and stderr files (such as *.e28678.8, *.o4436) 4. files end with .con .grp .Icon .mat
Load the module first
module load ccnscripts
For clean up feat folders,
clean_up.sh -f /PATH/TO/FOLDER
For .o and .e files
clean_up.sh -o /PATH/TO/FOLDER
For tsplot
clean_up.sh -t /PATH/TO/FOLDER
Log File:
A log file will be generated under the folder where you run it, named as "clean_up_log.YYYYMMDD_ss"
This script will moved selected files to $SCRATCH folder. In case you want to recover files being cleaned up by this script, you can look for them in your $SCRATCH folder