Hoffman2:Scripts:clean up.sh: Difference between revisions

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  3. FSL stdout and stderr files (such as *.e28678.8, *.o4436)
  3. FSL stdout and stderr files (such as *.e28678.8, *.o4436)
  4. files end with .con .grp .Icon .mat
  4. files end with .con .grp .Icon .mat


Load the module first
Load the module first

Revision as of 22:35, 19 May 2025

This script is used to clean up the following files.

1. tsplot
2. feat folders (+.feat)
3. FSL stdout and stderr files (such as *.e28678.8, *.o4436)
4. files end with .con .grp .Icon .mat

Load the module first

module load ccnscripts


For clean up feat folders,

clean_up.sh -f /PATH/TO/FOLDER


For .o and .e files

clean_up.sh -o /PATH/TO/FOLDER


For tsplot

clean_up.sh -t /PATH/TO/FOLDER

Log File: A log file will be generated under the folder where you run it, named as "clean_up_log.YYYYMMDD_ss"

This script will moved selected files to $SCRATCH folder. In case you want to recover files being cleaned up by this script, you can look for them in your $SCRATCH folder