Hoffman2:Job Submission Templates: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
*example script for submitting a single job | *example script for submitting a single job | ||
'''[[Hoffman2:Submit_job_example_(tcsh)|Submit job example (tcsh)]]''' | '''[[Hoffman2:Submit_job_example_(tcsh)|Submit job example (tcsh)]]''' | ||
same as above, written for tcsh | *same as above, written for tcsh | ||
'''[[Hoffman2:Submit_jobarray_example|Submit jobarray example]]''' | '''[[Hoffman2:Submit_jobarray_example|Submit jobarray example]]''' | ||
*example script for submitting a jobarray with hard-coded array values | *example script for submitting a jobarray with hard-coded array values | ||
Revision as of 22:52, 14 November 2017
- example script for submitting a single job
- same as above, written for tcsh
- example script for submitting a jobarray with hard-coded array values
Submit jobarray example (readarray)
- example script for submitting a jobarray with an array read in from a file, e.g. 'subjects.txt'
To work with these example scripts:
- Edit the "preamble" content at the top to adjust the memory (h_data) and run time (h_rt). You can also adjust the number of cores: 2 cores is '-pe shared 2'. I recommend 2, 4, or 8 for this value. Be aware that the number of cores is a multiplier for the RAM. h_data=4G and 2 cores is 8G total.
- Put your script content at the bottom.
- Submit directly to the job scheduler like this:
qsub myscript.sh