Principles of Neuroimaging B - 2014: Difference between revisions
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===- EKG Circuit Build. ''Speaker'': Cameron Rodriguez=== | ===- EKG Circuit Build. ''Speaker'': Cameron Rodriguez=== | ||
=Week | =Week 3 - Swine flu and MRI= | ||
==''Monday 1/20/14''== | |||
===Class canceled due to flu. Sorry=== | |||
==''Wednesday 1/22/14''== | |||
Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies | Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies | ||
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''Suggested Further Reading'' | ''Suggested Further Reading'' | ||
[[image:PSatSeq.jpg|right]] | [[image:PSatSeq.jpg|right]] | ||
=Week 4 - Magnetic Resonance Imaging= | |||
==''Monday 1/27/1'' - MRI== | ==''Monday 1/27/1'' - MRI== | ||
| Line 47: | Line 51: | ||
''Required Readings'' | ''Required Readings'' | ||
Slides should be up soon. | Slides should be up soon. | ||
:*[[media:1_DiffusionMRI_Methods_v1.pdf | Ben Ellingson Diffusion Slides]] uploaded 3/14/14 | |||
''Suggested Further Reading'' | ''Suggested Further Reading'' | ||
:*[[ | :*[[media:DTIHageman.pdf | Hageman DTI Slides]] | ||
:*[[ | :*[[media:NICourse_DTILecture4Post_11-01-26.pdf | Hageman DTI Notes 2/26/12]] | ||
:*[http://www.ncbi.nlm.nih.gov/pubmed/15037456?dopt=Citation Diffusion tensor imaging of cerebral white matter: a pictorial review of physics, fiber tract anatomy, and tumor imaging patterns AJNR Am J Neuroradiol. 2004 Mar;25(3):356-69] | :*[http://www.ncbi.nlm.nih.gov/pubmed/15037456?dopt=Citation Diffusion tensor imaging of cerebral white matter: a pictorial review of physics, fiber tract anatomy, and tumor imaging patterns AJNR Am J Neuroradiol. 2004 Mar;25(3):356-69] | ||
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:*[http://www.ncbi.nlm.nih.gov/pubmed/8661285?dopt=Citation Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J Magn Reson B. 1996 Jun;111(3):209-19] | :*[http://www.ncbi.nlm.nih.gov/pubmed/8661285?dopt=Citation Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J Magn Reson B. 1996 Jun;111(3):209-19] | ||
:*[http://www.ncbi.nlm.nih.gov/pubmed/16950152?dopt=Citation Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron. 2006 Sep 7;51(5):527-39] | :*[http://www.ncbi.nlm.nih.gov/pubmed/16950152?dopt=Citation Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron. 2006 Sep 7;51(5):527-39] | ||
==''Wednesday 2/12/14''== | ==''Wednesday 2/12/14''== | ||
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=Week 8 Transcranial Magnetostimulation and PET applications= | =Week 8 Transcranial Magnetostimulation and PET applications= | ||
==''Monday 2/24/14 | ==''Monday 2/24/14''== | ||
===TMS. ''Speaker'': [http://faculty.bri.ucla.edu/institution/personnel?personnel_id=121107 Allan Wu]=== | ===TMS. ''Speaker'': [http://faculty.bri.ucla.edu/institution/personnel?personnel_id=121107 Allan Wu]=== | ||
'Required Readings'' | 'Required Readings'' | ||
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:*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine, 14(2): p. 409-414. 1990] | :*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine, 14(2): p. 409-414. 1990] | ||
==Wednesday 2/26/ | ==Wednesday 2/26/1.== | ||
===PET applications. ''Speaker'': [http://www.semel.ucla.edu/profile/edythe-london Edythe London]=== | ===PET applications. ''Speaker'': [http://www.semel.ucla.edu/profile/edythe-london Edythe London]=== | ||
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==''Monday 3/3/14'' - Class canceled== | ==''Monday 3/3/14'' - Class canceled== | ||
==''Wednesday 3/5/14''== | ==''Wednesday 3/5/14''== | ||
===Spectroscopy. | ===Spectroscopy. ''Speaker:'' [http://radiology.ucla.edu/body.cfm?id=48&action=detail&ref=65 Albert Thomas]=== | ||
Handouts distributed in class | Handouts distributed in class | ||
=Week 10 - Compressed sensing and finals= | =Week 10 - Compressed sensing and finals= | ||
==''Monday 3/10/14''== | ==''Monday 3/10/14''== | ||
===Compressed Sensing. | ===Compressed Sensing. ''Speaker:'' [http://www.math.ucla.edu/~yanm/ Ming Yan]=== | ||
:*[[IntroductionToCS.pdf | Ming Yan's slides on compressive sensing]] | :*[[IntroductionToCS.pdf | Ming Yan's slides on compressive sensing]] | ||
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''Suggested Further Reading'' | ''Suggested Further Reading'' | ||
:*READING | :*READING | ||
::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=4472240 ''"An Introduction to Compressive Sampling"'' EJ Candes, MB Watkin, IEEE Signal Processing Magazine, March, 2008] <-- Mark's favorite. This is a good overview of the field. | |||
::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance ''"Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging"'' M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007] Lustig demonstrates each step in the process with examples using MRI. | |||
::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 ''"Compressed Sensing"'', D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006] One of the more accessible formal discussions of CS | |||
::[http://dsp.rice.edu/cs Rice University Compressed Sensing Resources]. A repository of scholarly work on CS. | |||
Latest revision as of 18:19, 14 March 2014
Principles of Neuroimaging B, Winter, 2012 - Class Schedule and Syllabus
Week 1 - A late start
Monday 1/6/14, Wednesday 1/8/14 - No Class
Week 2 - in class lab project
Monday 1/13/14, Wednesday 1/15/14
- EKG Circuit Build. Speaker: Cameron Rodriguez
Week 3 - Swine flu and MRI
Monday 1/20/14
Class canceled due to flu. Sorry
Wednesday 1/22/14
Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies
OUTLINE Required Readings
- MRI Slides
- These notes by Joseph Hornak are highly professional and complete coverage of MRI.
- eMRI is another excellent online MRI learning resource
- Erwin Hahn - Spin Echoes: Essential reading for the MRI community
above: Figure 1 from Hahn, 1950
Suggested Further Reading
Week 4 - Magnetic Resonance Imaging
Monday 1/27/1 - MRI
-MRI I Speaker: Cohen
Required Readings
Wednesday 1/29/14 - MRI II. Speaker: Cohen
Week 5 MRI and multimodal imaging
Monday 2/3/14
MRI (fMRI) III. Speaker: Cohen
Wednesday 2/5/14
Multimodal imaging. Speaker: Cohen
Week 6 Diffusion and PET
Monday 2/10/14
Diffusion imaging. Speaker: Ben Ellingson
Required Readings Slides should be up soon.
- Ben Ellingson Diffusion Slides uploaded 3/14/14
Suggested Further Reading
- Sadly, the library does not have a subscription for the journals below (Mark has copies on reserve in his office):
Wednesday 2/12/14
Positron Emission Tomography. Speaker: Magnus Dahlboun
Handouts distributed in class.
Week 7
Monday 2/17/14 Presidents Day - No class
Wednesday 2/19/14
Week 8 Transcranial Magnetostimulation and PET applications
Monday 2/24/14
TMS. Speaker: Allan Wu
'Required Readings
Suggested Further Reading Once upon a time we demonstrated that this sort of magnetic stimulation can take place in the MRI machines:
Wednesday 2/26/1.
PET applications. Speaker: Edythe London
Week 9 - Spectroscopy
Monday 3/3/14 - Class canceled
Wednesday 3/5/14
Spectroscopy. Speaker: Albert Thomas
Handouts distributed in class
Week 10 - Compressed sensing and finals
Monday 3/10/14
Compressed Sensing. Speaker: Ming Yan
To access the slides from the course web site listed on his handout, The username is "caame654", and password is "dense".
Suggested Further Reading
- READING
- "An Introduction to Compressive Sampling" EJ Candes, MB Watkin, IEEE Signal Processing Magazine, March, 2008 <-- Mark's favorite. This is a good overview of the field.
- "Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging" M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007 Lustig demonstrates each step in the process with examples using MRI.
- "Compressed Sensing", D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006 One of the more accessible formal discussions of CS
- Rice University Compressed Sensing Resources. A repository of scholarly work on CS.