Hoffman2:Software Tools: FMRIprep

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FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data

Official Website

Bug Report

Fmriprep Command Line Usage

From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.

module load singularity
singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.5/fmriprep-20.2.5.sif
exit ##to stop container

Or use the following command to run it

singularity run --cleanenv fmriprep.sif path/to/data/dir path/to/output/dir \
   participant --participant-label label

For more details, please check FMRIprep's | official site

FMRIprep is no longer a module in Hoffman2, please use the container version

Hoffman2:Software Tools: FMRIprep

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