Hoffman2:Software Tools: FMRIprep: Difference between revisions
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Usage [https://fmriprep.org/en/stable/usage.html] | Usage [https://fmriprep.org/en/stable/usage.html] | ||
For using FMRIprep module, the following modules are needed as well | For using FMRIprep module in Hoffman, the following modules are needed as well | ||
(This example is for FMRIprep version '''1.4.0''') | |||
module load fsl/5.0.9 | module load fsl/5.0.9 | ||
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export PATH=/u/project/CCN/apps/c3d/c3d-1.0.0-Linux-x86_64/bin/:$PATH | export PATH=/u/project/CCN/apps/c3d/c3d-1.0.0-Linux-x86_64/bin/:$PATH | ||
To load FMRIprep module | |||
module load fmriprep/1.4.0 | |||
Note: | |||
For fmriprep/20.1.1, python module version needs to be python/3.7.0 | |||
Revision as of 21:42, 15 July 2020
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
Official Website:[1]
Usage [2]
For using FMRIprep module in Hoffman, the following modules are needed as well (This example is for FMRIprep version 1.4.0)
module load fsl/5.0.9 module load python/3.7.2 module load freesurfer/6.0.0 module load ants/ants-2.2.0 module load afni/19.0.15 module load ica-aroma module load itksnap/3.6.0-RC1.QT4 export PATH=/u/project/CCN/apps/c3d/c3d-1.0.0-Linux-x86_64/bin/:$PATH
To load FMRIprep module
module load fmriprep/1.4.0
Note:
For fmriprep/20.1.1, python module version needs to be python/3.7.0