Hoffman2:Software Tools:FastSurfer

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FastSurfer

Official Website

This current version requires CentOS 7work nodes and conda environment.

module load anaconda3/2020.11
. /u/local/apps/anaconda3/2020.11/etc/profile.d/conda.sh

Use it with GPU node

conda activate /u/project/CCN/apps/fastsurfer/202102_gpu

Use it with regular CPU only node

conda activate /u/project/CCN/apps/fastsurfer/202102_cpu


FastSurfer code is under

 cd /u/project/CCN/apps/fastsurfer/202102/FastSurfer

To check the usage

./run_fastsurfer.sh -h

Once you finish using it, exit the conda virtual environment by

conda deactivate