Hoffman2:Software Tools:FastSurfer

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FastSurfer

This current version requires CentOS 7 work node and conda environment. 

module load anaconda3/2020.11
. /u/local/apps/anaconda3/2020.11/etc/profile.d/conda.sh

Use it with GPU node
conda activate /u/project/CCN/apps/fastsurfer/202102_gpu

Use it with regular CPU only node
conda activate /u/project/CCN/apps/fastsurfer/202102_cpu


Fastsurfer code is under 

 cd /u/project/CCN/apps/fastsurfer/202102/FastSurfer

To check the usage ./run_fastsurfer.sh -h

Once you finish using it, exit the conda virtual environment by 

conda deactivate
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