Hoffman2:Software Tools:FastSurfer: Difference between revisions

Latest revision as of 22:23, 16 August 2021

This current version requires CentOS 7work nodes and conda environment.

module load anaconda3/2020.11
. /u/local/apps/anaconda3/2020.11/etc/profile.d/conda.sh

Use it with GPU node

conda activate /u/project/CCN/apps/fastsurfer/202102_gpu

Use it with regular CPU only node

conda activate /u/project/CCN/apps/fastsurfer/202102_cpu

FastSurfer code is under

 cd /u/project/CCN/apps/fastsurfer/202102/FastSurfer

To check the usage

./run_fastsurfer.sh -h

Once you finish using it, exit the conda virtual environment by

conda deactivate

@@ Line 3: / Line 3: @@
 [https://github.com/Deep-MI/FastSurfer/ Official Website]
-This current version requires [[https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Software_Tools:CentOS_7#CCN_modules_for_CentOS_7| CentOS 7]] work node and conda environment.
+This current version requires [https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Software_Tools:CentOS_7#CCN_modules_for_CentOS_7| CentOS 7]work nodes and conda environment.
   module load anaconda3/2020.11