Hoffman2:Software Tools:FastSurfer: Difference between revisions
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[https://github.com/Deep-MI/FastSurfer/ Official Website] | [https://github.com/Deep-MI/FastSurfer/ Official Website] | ||
This current version requires CentOS 7 work node and conda environment. | This current version requires [[https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Software_Tools:CentOS_7#CCN_modules_for_CentOS_7| CentOS 7]] work node and conda environment. | ||
module load anaconda3/2020.11 | module load anaconda3/2020.11 |
Revision as of 22:23, 16 August 2021
FastSurfer
This current version requires [CentOS 7] work node and conda environment.
module load anaconda3/2020.11 . /u/local/apps/anaconda3/2020.11/etc/profile.d/conda.sh
Use it with GPU node
conda activate /u/project/CCN/apps/fastsurfer/202102_gpu
Use it with regular CPU only node
conda activate /u/project/CCN/apps/fastsurfer/202102_cpu
FastSurfer code is under
cd /u/project/CCN/apps/fastsurfer/202102/FastSurfer
To check the usage
./run_fastsurfer.sh -h
Once you finish using it, exit the conda virtual environment by
conda deactivate