Hoffman2:Software Tools:FastSurfer: Difference between revisions
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===FastSurfer=== | ===FastSurfer=== | ||
[https://github.com/Deep-MI/FastSurfer/ Official Website] | |||
This current version requires CentOS 7 work node and conda environment. | This current version requires CentOS 7 work node and conda environment. | ||
Revision as of 22:17, 16 August 2021
FastSurfer
This current version requires CentOS 7 work node and conda environment.
module load anaconda3/2020.11 . /u/local/apps/anaconda3/2020.11/etc/profile.d/conda.sh
Use it with GPU node
conda activate /u/project/CCN/apps/fastsurfer/202102_gpu
Use it with regular CPU only node
conda activate /u/project/CCN/apps/fastsurfer/202102_cpu
Fastsurfer code is under
cd /u/project/CCN/apps/fastsurfer/202102/FastSurfer
To check the usage
./run_fastsurfer.sh -h
Once you finish using it, exit the conda virtual environment by
conda deactivate