Hoffman2:Software Tools:FMRIprep: Difference between revisions
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The following command need to be run in a CentOS 7 node. | The following command need to be run in a CentOS 7 node. | ||
<!-- module load singularity | |||
singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif | singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif | ||
exit ##to stop container | exit ##to stop container | ||
Or as the instruction from FMRIPrep official site | Or as the instruction from FMRIPrep official site --> | ||
module load singularity | module load singularity | ||
Revision as of 19:18, 17 May 2022
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.
module load singularity singularity run --cleanenv /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif \ path/to/data/dir path/to/output/dir \ participant --participant-label label