Hoffman2:Software Tools:FMRIprep: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
Line 16: | Line 16: | ||
module load singularity | module load singularity | ||
singularity run --cleanenv fmriprep. | singularity run --cleanenv /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif \ | ||
path/to/data/dir path/to/output/dir \ | |||
participant --participant-label label | participant --participant-label label | ||
Revision as of 19:17, 17 May 2022
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.
module load singularity singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif exit ##to stop container
Or as the instruction from FMRIPrep official site
module load singularity singularity run --cleanenv /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif \ path/to/data/dir path/to/output/dir \ participant --participant-label label